BAC Information

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BAC

Clone NameMSMg01-388O16
Chromosome2 (Build37)
Map Location 24,778,595 - 24,978,236
singlet/doubletdoublet
Overlap geneArrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1
Downstream geneNrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388O16.T7 (MSMg01no388_o16.b1)MSMg01-388O16.TJ (MSMg01no388_o16.g1)
ACCAG491297AG491298
length795804
length of high quality
(start - end)
371 (35 - 405)335 (79 - 413)
definitionCHROMAT_FILE: MSMg01no388_o16.b1 PHD_FILE: MSMg01no388_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:21 2005CHROMAT_FILE: MSMg01no388_o16.g1 PHD_FILE: MSMg01no388_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,977,872 - 24,978,236)(24,778,595 - 24,778,929)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXTTCGCAGAGGATCCGCGGAATTCTTA
CCTGTACCAGCATTTCTTCATCTGGATTTCTGATGCCACCTACCTCCATG
AAATGCCTTCTGTAAGAAAAGCCTCATTGTGTCCACAAGCTGGAGCTGAA
CACTTAGGGGCAAGTCAGGGAAGCTGTCACCAGTGCAGAAGCCACATGCT
ATCTGCTATGGCAAAGGTAGTCCTCAGTGCCCAAGGTGGGGACAATGCTT
TCAAAGGAACTCCAAGAGTACCCATAAGGCTTTAATGTAGCTTTAACATC
GCAGCGATCTTGACAATAAAACAGACTTTAGGGACACCCGTGCTCCAACA
TTAACACTTACCAATGGCTGCTGAATACCAGGAAAGAGAATCTGACAAGA
TAATGCCACCATGCCCCCAGACCCCAAGGNTGTGGGGAGGCATTAACTCT
CAGGGGCAGTATATGAGGATAGCGATCCTATGCATACCCAGGAGGGCACA
ACGCAAGTCCGCCTGCTTACATGGACTCCAGGACCTCCAGGACACCACTG
TAGCGCTTGCATCCCACCTTGGAACACGCACCCCCCTTTGTCTCTGGGCC
CCCCGGCAACCCTCCTCCAGCGACCCTTACTCTCCCTACCAACCACCCCC
ATGGTTATTTTCCCACCCGACCACCTACCTCCCTGGTCTGTTTTCCCCCA
CGCCTAACCTGTTCCCTTCCTCACTTTAACTCATCTCTACCTCCCCCCCT
CTTGTCTCCCCCCCGCTTCTCTACTTTACACCATGCTCTTCCTCG
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCTATGTGCAGTTTTGGAC
ATCTACAGGGGGGTCTCAGAACATACTCCTTGCAGATGAGGAGACATTAC
TGTATAGTCTTGTTCTAAATTGGTTTCTGGTAGACTGGTCAGAGAAGCCT
GCCTTGTGCAACCAACACAAGACCTTTAGTGTTTTGGTTTCAGACAGGGT
TTCTCTGTGCAGCTCCAGCTATCTGGAACTCCATCTGTCCACCAGGCTGG
CCTTGAACTCAGATATCTATTTTTCTCTGCCTTCCAAGTCCTGGGATTAA
AGGTGTGCACCACCAGTACCTTGCTATGGCTTTGAGTCTTAACCTCCAAT
CACAGATGCATTTTCACCCCCCCGCTTTTGCCAAAAAGCAGATACTGTGA
GCTGTATCCTGGGGGATGCCTCAGTAATGGGCCTAGGGACATGGACTTTG
CTCTGCTTGTGTGGCACACCTGGTAAAGGATGCCGCTCTAACATGATTAA
TGACCTGTATGGCTAGCCTCCCCCAGTTTGAACGCACTGTTTTGTTCTCA
CTATTTACCCTCTGTCCCTTTTTTGCTCCCACTTTTGCATTGTCTCTCCT
CCGTCCTTTTTTTATACTCGTTACTCCCCGCATTATCCTCCCTATCTCTC
CTCTTTGTGCCTCCTTATATTTTTCGCCGACCACCCCTTATCTTCTCTCG
TTTTTTGCTCTCTTTTTTTTCCCCTCCTCTATTCCTCCCCCTCTCCCTCC
AAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_o16.b1 MSMg01no388_o16.b1 CHROMAT_FILE:
MSMg01no388_o16.b1 PHD_FILE: MSMg01no388_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:21 2005
         (371 letters)



>mm_chr2_24977666_24978436
          Length = 771

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattcttacctgtaccagcatttcttcatctggatttctgatgccacctacctccatg 66
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggaattcttacctggaaaagcatttcttcatctggatttctgatgccacctacctccatg 512

                                                                       
Query: 67  aaatgccttctgtaagaaaagcctcattgtgtccacaagctggagctgaacacttagggg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaatgccttctgtaagaaaagcctcattgtgtccacaagctggagctgaacacttagggg 452

                                                                       
Query: 127 caagtcagggaagctgtcaccagtgcagaagccacatgctatctgctatggcaaaggtag 186
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 caagtcagggaagctgtcaccagtgcagaagccacatgatatctgctatggcaaaggtag 392

                                                                       
Query: 187 tcctcagtgcccaaggtggggacaatgctttcaaaggaactccaagagtacccataaggc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcctcagtgcccaaggtggggacaatgctttcaaaggaactccaagagtacccataaggc 332

                                                                       
Query: 247 tttaatgtagctttaacatcgcagcgatcttgacaataaaacagactttagggacacccg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tttaatgtagctttaacatcgcagcgatcttgacaataaaacagactttagggacacccg 272

                                                                       
Query: 307 tgctccaacattaacacttaccaatggctgctgaataccaggaaagagaatctgacaaga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgctccaacattaacacttaccaatggctgctgaataccaggaaagagaatctgacaaga 212

                
Query: 367 taatg 371
           |||||
Sbjct: 211 taatg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no388_o16.g1 MSMg01no388_o16.g1 CHROMAT_FILE:
MSMg01no388_o16.g1 PHD_FILE: MSMg01no388_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:21 2005
         (335 letters)



>mm_chr2_24778395_24779129
          Length = 735

 Score =  617 bits (319), Expect = 0.0
 Identities = 331/335 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgctatgtgcagttttggacatctacaggggggtctcagaacatactccttgcagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgctatgtgcagttttggacatctacaggggggtctcagaacatactccttgcagatg 260

                                                                       
Query: 61  aggagacattactgtatagtcttgttctaaattggtttctggtagactggtcagagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagacattactgtatagtcttgttctaaattggtttctggtagactggtcagagaagc 320

                                                                       
Query: 121 ctgccttgtgcaaccaacacaagacctttagtgttttggtttcagacagggtttctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgccttgtgcaaccaacacaagacctttagtgttttggtttcagacagggtttctctgt 380

                                                                       
Query: 181 gcagctccagctatctggaactccatctgtccaccaggctggccttgaactcagatatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagctccagctatctggaactccatctgtccaccaggctggccttgaactcagatatct 440

                                                                       
Query: 241 atttttctctgccttccaagtcctgggattaaaggtgtgcaccaccagtaccttgctatg 300
           |  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctggctctgccttccaagtcctgggattaaaggtgtgcaccaccagtaccttgctatg 500

                                              
Query: 301 gctttgagtcttaacctccaatcacagatgcattt 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 gctttgagtcttaacctccaatcacagatgcattt 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)