BAC Information

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BAC

Clone NameMSMg01-389F16
Chromosome2 (Build37)
Map Location 47,486,477 - 47,633,922
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC383691, LOC100041457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389F16.T7 (MSMg01no389_f16.b1)MSMg01-389F16.TJ (MSMg01no389_f16.g1)
ACCAG491629AG491630
length763739
length of high quality
(start - end)		437 (73 - 509)566 (79 - 644)
definitionCHROMAT_FILE: MSMg01no389_f16.b1 PHD_FILE: MSMg01no389_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:55 2005CHROMAT_FILE: MSMg01no389_f16.g1 PHD_FILE: MSMg01no389_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,633,486 - 47,633,922)(47,486,477 - 47,487,042)
sequence
NNCCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTCATTTCATACAGCTGAGCAAAATTTCATTGTGTAAAGAG
AATTGTTTATACATACTATGGACACTAAGTAAGAAAAAGATGTCAGTGGG
GAAACATATCTGGGAAAAATTTGCTCTGAGAGCAGAGCAAAATCTAAAGA
CAAAATTTGAATAACTTTTCCAAGTTAGTAACATATAAGTTTCTCATCAT
TTGGGGAAATGACATATTTAGTGTTGGGATAATAAATCTGGAAGATTCAT
CAGGTTAGCCCACTAAGACCAAGGACCTTTGGAGTGTTCCAAGTATGGAG
AAATAAGGTTGTAAAATAAAAACAGCTCTGTGTACCCTTTCTGACAATTT
ACCTAACGGAATAGCAAAGGTTTCCAGTTATTTATTGTGATTTGCTTCGT
TCAAAAATATTCATTTTTATGCATTTTCTGCATCCATAACTTTGTGTTCT
TCCTTAAAGTGCTCTCCAGTTGATATAAATCAGATTTCACAAGGCTAGGT
TCCCCCTTGTTTGGCAGGCAATCATTCAGTCTGCCCTGTGAAGNTTATTT
CATGCAGTTCCCTCTGACCACATGGATCAACTTGACCCATAGTCCGCGAG
CACTGCCGCCCCCAACAAAGCCTAAACCTCCCCTATCCCCGNTCCGCCAC
TCTGCTACACCCCAAATTTCCCTTACGACCCCCTTTTACGCATCCTTCCC
TTGCCTCCCCCCC

NNNTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAATATTCTGGAGCATGAATA
CTGGAAGATTATAAAGGGCTTCTTTCAACAAAAGATTGTTCTTAATTTCA
TCAGCTATAAATAAATAATCATGGTAGTTACTTTCCTCTTTGTGTGGATC
TAGAAGAAGCACATTAAGGAAGAAACTGTTTGTTTTGGCTTATATTTGAA
GGTATGTCCATCATGATGGACAAAGCATGGCATCAGGAGAATGAATCAGA
TGATCACATTGCATGAGCAGTTGTTAAGCAAAGAAAAATGATAAGTCTGA
ATTGTTTTCAACCCTGTTCAGGATTCCCATTTATAAAGCAGTGCTGCCCA
CTCTGTTTCCCAGGTGCTTCTAGATGTTGTCCAGGTGGTAATTAATAATA
GCCATCATACTGATCTTTAAGCAATTAATAATGGTGGCATATATAAGAAC
TTGTTTTTAAAACATTATTTAACATCCACAATAGTTTCAGATAGAATCTG
GCAAATACCTTGAACTTCTTTTAAATAATAAGTCAATTGCTAAATGTACA
CTTAGGGCTTGAATCCAATAGGCTCTGAGTCAATGTGATGATAGAACCCC
AAACCACAACTATACATGTGTGTGAGAAATTAGTATTAATCATCACAGCA
TTCTCTCTAGGCCTATGATTATACATTTTTGAATGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_f16.b1 MSMg01no389_f16.b1 CHROMAT_FILE:
MSMg01no389_f16.b1 PHD_FILE: MSMg01no389_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:55 2005
         (437 letters)



>mm_chr2_47633286_47634122
          Length = 837

 Score =  830 bits (429), Expect = 0.0
 Identities = 435/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgagcaaaatttcattgtgtaaagagaattgtttatacatactatggacactaagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gctgagcaaaatttcattgtgtaaagagaattgtttatacatactatggacactaagtaa 578

                                                                       
Query: 61  gaaaaagatgtcagtggggaaacatatctgggaaaaatttgctctgagagcagagcaaaa 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 577 gaaaaagatgtcagtggggaaacatgtctgggaaaaatttgctctgagagcagagcaaaa 518

                                                                       
Query: 121 tctaaagacaaaatttgaataacttttccaagttagtaacatataagtttctcatcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tctaaagacaaaatttgaataacttttccaagttagtaacatataagtttctcatcattt 458

                                                                       
Query: 181 ggggaaatgacatatttagtgttgggataataaatctggaagattcatcaggttagccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggggaaatgacatatttagtgttgggataataaatctggaagattcatcaggttagccca 398

                                                                       
Query: 241 ctaagaccaaggacctttggagtgttccaagtatggagaaataaggttgtaaaataaaaa 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 397 ctaagaccaaggacctttggagtgttccaagtgtggagaaataaggttgtaaaataaaaa 338

                                                                       
Query: 301 cagctctgtgtaccctttctgacaatttacctaacggaatagcaaaggtttccagttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cagctctgtgtaccctttctgacaatttacctaacggaatagcaaaggtttccagttatt 278

                                                                       
Query: 361 tattgtgatttgcttcgttcaaaaatattcatttttatgcattttctgcatccataactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tattgtgatttgcttcgttcaaaaatattcatttttatgcattttctgcatccataactt 218

                            
Query: 421 tgtgttcttccttaaag 437
           |||||||||||||||||
Sbjct: 217 tgtgttcttccttaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no389_f16.g1 MSMg01no389_f16.g1 CHROMAT_FILE:
MSMg01no389_f16.g1 PHD_FILE: MSMg01no389_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:56 2005
         (566 letters)



>mm_chr2_47486277_47487242
          Length = 966

 Score = 1048 bits (542), Expect = 0.0
 Identities = 560/566 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaatattctggagcatgaatactggaagattataaagggcttctttcaacaaaagattg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 taaatattctggagcatgaatactggaagattaaaaagggcttctttcaacaaaagattg 260

                                                                       
Query: 61  ttcttaatttcatcagctataaataaataatcatggtagttactttcctctttgtgtgga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttcttaatttcatcagctataaataaataatcatggtagttactttcctctttgtgcgga 320

                                                                       
Query: 121 tctagaagaagcacattaaggaagaaactgtttgttttggcttatatttgaaggtatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagaagaagcacattaaggaagaaactgtttgttttggcttatatttgaaggtatgtc 380

                                                                       
Query: 181 catcatgatggacaaagcatggcatcaggagaatgaatcagatgatcacattgcatgagc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcatgatggacaaagcatgacatcaggagaatgaatcagatgatcacattgcatgagc 440

                                                                       
Query: 241 agttgttaagcaaagaaaaatgataagtctgaattgttttcaaccctgttcaggattccc 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttgggaagcaaagaaaaatgataagtctgaattgttttcaaccctgttcaggattccc 500

                                                                       
Query: 301 atttataaagcagtgctgcccactctgtttcccaggtgcttctagatgttgtccaggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttataaagcagtgctgcccactctgtttcccaggtgcttctagatgttgtccaggtgg 560

                                                                       
Query: 361 taattaataatagccatcatactgatctttaagcaattaataatggtggcatatataaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattaataatagccatcatactgatctttaagcaattaataatggtggcatatataaga 620

                                                                       
Query: 421 acttgtttttaaaacattatttaacatccacaatagtttcagatagaatctggcaaatac 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 acttgtttttaaaacattatttaacatccataatagtttcagatagaatctggcaaatac 680

                                                                       
Query: 481 cttgaacttcttttaaataataagtcaattgctaaatgtacacttagggcttgaatccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgaacttcttttaaataataagtcaattgctaaatgtacacttagggcttgaatccaa 740

                                     
Query: 541 taggctctgagtcaatgtgatgatag 566
           ||||||||||||||||||||||||||
Sbjct: 741 taggctctgagtcaatgtgatgatag 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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