BAC Information

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BAC

Clone NameMSMg01-389H03
Chromosome2 (Build37)
Map Location 69,053,311 - 69,114,233
singlet/doubletdoublet
Overlap geneG6pc2, Abcb11
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25
Downstream geneDhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389H03.T7 (MSMg01no389_h03.b1)MSMg01-389H03.TJ (MSMg01no389_h03.g1)
ACCAG491699AG491700
length759755
length of high quality
(start - end)		450 (85 - 534)501 (80 - 580)
definitionCHROMAT_FILE: MSMg01no389_h03.b1 PHD_FILE: MSMg01no389_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:03 2005CHROMAT_FILE: MSMg01no389_h03.g1 PHD_FILE: MSMg01no389_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,053,311 - 69,053,760)(69,113,733 - 69,114,233)
sequence
NNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTGACCTAACACCTTAGCGCCACCAAGAAAAAAATGATT
AGCACAAGTCCATGGGCAACTCTCCTAGTAAGAAACCTGTGATCCAAGCA
CCGGCTTATGGATGTGTAGGTCATGATCATTTCTAGGGACGAGTTCATAA
TGAGACTAATGGAAGGGGTCCCTGAAAGCTGTGGCAAGATAATTTATAAT
AGTGTCATTACGGAATGCCAGTATTCCTGGGATGTGAGCCAGAATGGCGG
TAAAGTAATTATTTTCTAAAACTCACTAGAGCTTAAAGCCTAGAGTCTGA
AATAAATCCATTTATACTGCAAGGTGACACCGGAGAGTTCTCAAATGTGA
TTTATTTTAGAAAAGGCAGATAAGTTTGTTAGAAGGGTAACGGCCATGAA
GACATTAAAGGCCTATTTTTGTTTCCTGCCAAGGTATGAGCAGCGCTAGC
CAAAGCTAAACTTGTCTAAATGGTCTTGAACTGTAGCAGGCACTATAACT
CAGAAACAAATAGTTCATTTTATAATAAGACTATACCTTGTGGNTTTTAA
ATATTAGCTGTGGCCAAACATCCTGGAGAATTCTGCCCAATGGCTTCCAC
GTTGCATTCTAAACCAGCCGAGTTTACTTAAAACCCTGGAAAAGTTAATT
AACCCCGAATGACACCTTCTCGCAGAGAAACAAAGAATCCTTTTCCATCC
CTACCCCCT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCTCTTTCTCATTCTGATG
TCATCTTCTGTGGACTGGGAAATACTCTGGCTCTGGGCGTTCCTAAAGTG
TCTACTGCTACAAAGCAATTACCTCCACCTTGTGGTCTCTCAGAGTATTT
ACAGAACATGTAGAAGAGCTGAGGCTTGTTAGGAGTCTGCCCTAAACTCT
AGGTGGGATGACTCATTGAAAGCATCAGCTAATGACAGAGCTAAGCTGGT
TCTCCTTCTCCAAGCTGTCTGCATCTTTAGCTCTTATGTGGGATCAGATG
GTAAATATCCTATCAGGTTTGGTATTAAGGGGCATCTACAGAGTAGAAAT
TTCAGTCTCTAATATTTATGAGTCTTTTTCTTTCTTTTTAAAAAGACTTA
TTTATTCATTTTGTGTACATGAATGCACTGTCACTGTCACACCAGAAGAT
GGCATCAGATGTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGG
AGTTGAACTGGGGACCTCTGGAAGAGTAGTCAGTGCTCTTAACCACTAAG
CCATCTCTCCATCCCCCATGAATCTTTTTCAGTAAACCTATGAAACCACA
CATAAATATATTTACCTCCAGTCCAAGTGTGGAAAATTAAAATCTTGAAG
TTTTACCCCCCTGACATGGGGATTATTTCCTTCCTTACAACACAAACTGC
ATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_h03.b1 MSMg01no389_h03.b1 CHROMAT_FILE:
MSMg01no389_h03.b1 PHD_FILE: MSMg01no389_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:03 2005
         (450 letters)



>mm_chr2_69053111_69053960
          Length = 850

 Score =  855 bits (442), Expect = 0.0
 Identities = 448/450 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaaaaaaatgattagcacaagtccatgggcaactctcctagtaagaaacctgtgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaaaaaaatgattagcacaagtccatgggcaactctcctagtaagaaacctgtgatc 260

                                                                       
Query: 61  caagcaccggcttatggatgtgtaggtcatgatcatttctagggacgagttcataatgag 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 caagcaccggcttatggatgtgtaggtcatgatcatttctagggacgatttcataatgag 320

                                                                       
Query: 121 actaatggaaggggtccctgaaagctgtggcaagataatttataatagtgtcattacgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaatggaaggggtccctgaaagctgtggcaagataatttataatagtgtcattacgga 380

                                                                       
Query: 181 atgccagtattcctgggatgtgagccagaatggcggtaaagtaattattttctaaaactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccagtattcctgggatgtgagccagaatggcggtaaagtaattattttctaaaactc 440

                                                                       
Query: 241 actagagcttaaagcctagagtctgaaataaatccatttatactgcaaggtgacaccgga 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actagagcttaaaccctagagtctgaaataaatccatttatactgcaaggtgacaccgga 500

                                                                       
Query: 301 gagttctcaaatgtgatttattttagaaaaggcagataagtttgttagaagggtaacggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagttctcaaatgtgatttattttagaaaaggcagataagtttgttagaagggtaacggc 560

                                                                       
Query: 361 catgaagacattaaaggcctatttttgtttcctgccaaggtatgagcagcgctagccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgaagacattaaaggcctatttttgtttcctgccaaggtatgagcagcgctagccaaa 620

                                         
Query: 421 gctaaacttgtctaaatggtcttgaactgt 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 gctaaacttgtctaaatggtcttgaactgt 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no389_h03.g1 MSMg01no389_h03.g1 CHROMAT_FILE:
MSMg01no389_h03.g1 PHD_FILE: MSMg01no389_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:03 2005
         (501 letters)



>mm_chr2_69113688_69114588
          Length = 901

 Score =  922 bits (477), Expect = 0.0
 Identities = 495/501 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctctttctcattctgatgtcatcttctgtggactgggaaatactctggctctgggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctgctctttctcattctgatgtcatcttctgtggactgggaaatactctggctctgggcg 487

                                                                       
Query: 61  ttcctaaagtgtctactgctacaaagcaattacctccaccttgtggtctctcagagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttcctaaagtgtctactgctacaaagcaattacctccaccttgtggtctctcagagtatt 427

                                                                       
Query: 121 tacagaacatgtagaagagctgaggcttgttaggagtctgccctaaactctaggtgggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacagaacatgtagaagagctgaggcttgttaggagtctgccctaaactctaggtgggat 367

                                                                       
Query: 181 gactcattgaaagcatcagctaatgacagagctaagctggttctccttctccaagctgtc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 366 gactcattgaaagcatcagctattgacagagctaagctggttctccttctccaagctgtc 307

                                                                       
Query: 241 tgcatctttagctcttatgtgggatcagatggtaaatatcctatcaggtttggtattaag 300
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 306 tgcatctttagctcttatgtgggatcagatggtaaatatcctatcaggcttagtattaag 247

                                                                       
Query: 301 gggcatctacagagtagaaatttcagtctctaatatttatgagtctttttctttcttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gggcatctacagagtagaaatttcagtctctaatatttatgagtctttttctttcttttt 187

                                                                       
Query: 361 aaaaagacttatttattcattttgtgtacatgaatgcactgtcactgtcacaccagaaga 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 186 aaaaagacttatttattcattttgtgtatatgaatgcactgtcactgtcacaccagaaga 127

                                                                       
Query: 421 tggcatcagatgtcattacagatggttgtgagccaccatgtggttgctgggagttgaact 480
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cggcatcagatgccattacagatggttgtgagccaccatgtggttgctgggagttgaact 67

                                
Query: 481 ggggacctctggaagagtagt 501
           |||||||||||||||||||||
Sbjct: 66  ggggacctctggaagagtagt 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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