BAC Information

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BAC

Clone NameMSMg01-389J16
Chromosome2 (Build37)
Map Location 142,904,515 - 142,905,040
singlet/doubletsinglet
Overlap geneOtor
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2
Downstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389J16.T7 (MSMg01no389_j16.b1)MSMg01-389J16.TJ (MSMg01no389_j16.g1)
ACCAG491819AG491820
length762739
length of high quality
(start - end)
360 (73 - 432)530 (84 - 613)
definitionCHROMAT_FILE: MSMg01no389_j16.b1 PHD_FILE: MSMg01no389_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:16 2005CHROMAT_FILE: MSMg01no389_j16.g1 PHD_FILE: MSMg01no389_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
NGGAATTCTCACCTGTTCCCTACTGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAAAGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAGTCAGTCTGGTGGTTCCT
CAGAAAATTGGACATAGTAATACCTGAGAATCCCACAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCCAACCAGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGTACCCAG
ATTCCCCTCACCAGAGGAATGGATACCGAAAATGCGGTACATTTACCCAA
TGCAGTATTACTCAGCTATTACCAAGAATGAATTTACGACATTCCTAGGC
CAATGGATGGACCTCGAGCTTATCCTCCTGACCGCTGCACCTTCTCTACC
ACCGACCCTCCATGATATGCACCCATTGATCCTCGTATACCCGCCCCCCT
CCCTTACCCTTCTTTCCCATCTTTTTCCCTTTTGTTTAATCCCCCGCCCC
CCCCCCCCTACTGACCCCTCCTTCCCCCCTTCCTTCCCTTCCCTCCCCTA
CCATCCCCATCC
NNNNNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCTAAGATTTCCT
TGTCGCCCCCCCCCCAACCCCCACCCCCGTTTGAAACCCAGCTGTGCTCT
CCTTTCCTCTCTCCTACCTTTCTTACACTTTGCCTTCTTACTCATAGGAC
ATCTGGTCACTTCCCCCCCTTTTTTTTCTCTTCCAGATACTATTTCTCTG
GCAAGAGCACAGGAAGATTACAATGCCCCAGACTGTAGGTTCATCGATGT
CAAGAAAGGGCAGCAGATCTATGTTTACTCTTTGCTGGTAACAGAAAACG
GAGCTGGAGAGTTTTGGGCTGGCAGTGTAAGACGAGACTGTTTTTAATAC
ATACACACATACATACATACATACATACATACATATATACATACATACAT
ACATATGTATATATTCTTAATTGTATTACTCTTAATTTTTCCTGGCTTTC
CTGTCCTCAGTCTGTTTAATGTTTAACAGTAGCTGCAAAGATAATATGGA
AACCGTAAGTGGAAACACAAAAATTCAGATTCATTTTTAAAAAGGGGTGA
TTTCACAACAAAATTAAGGGCAATTCAAACTGATGTTTTGATCAGGGAAA
AAAAAACATGCATTGCTGAGGTTTCTGCATTGCACATAAGTTAAGTCTCT
TTCCAAAAATGTCTAAAAGGATTTGCCTAGGGTTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_j16.g1 MSMg01no389_j16.g1 CHROMAT_FILE:
MSMg01no389_j16.g1 PHD_FILE: MSMg01no389_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:16 2005
         (530 letters)



>mm_chr2_142904311_142905240
          Length = 930

 Score =  928 bits (480), Expect = 0.0
 Identities = 516/534 (96%), Gaps = 12/534 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcctaagatttccttgtcgccccccccccaacccccacccccgtttgaaacccagct 60
           |||||||||||||||||||||||||||| |  |||||||      |||||||||||||||
Sbjct: 205 atttcctaagatttccttgtcgccccccgc--aaccccc------gtttgaaacccagct 256

                                                                       
Query: 61  gtgctctcctttcctctctcctacctttcttacactttgccttcttactcataggacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtgctctcctttcctctctcctacctttcttacactttgccttcttactcataggacatc 316

                                                                       
Query: 121 tggtcacttcccccccttttttttctcttccagatactatttctctggcaagagcacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tggtcacttcccccccttttttttctcttccagatactatttctctggcaagagcacagg 376

                                                                       
Query: 181 aagattacaatgccccagactgtaggttcatcgatgtcaagaaagggcagcagatctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aagattacaatgccccagactgtaggttcatcgatgtcaagaaagggcagcagatctatg 436

                                                                       
Query: 241 tttactctttgctggtaacagaaaacggagctggagagttttgggctggcagtgtaagac 300
           |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttactccaagctggtaacagaaaacggagctggagagttttgggctggcagtgtaagac 496

                                                                       
Query: 301 gagactgtttttaatacataca----cacatacatacatacatacatacatacatatata 356
           ||||||||||||||||||||||    |||||||||||||||||||||||||||||| |||
Sbjct: 497 gagactgtttttaatacatacatacacacatacatacatacatacatacatacatacata 556

                                                                       
Query: 357 catacatacatacatatgtatatattcttaattgtattactcttaatttttcctggcttt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catacatacatacatatgtatatattcttaattgtattactcttaatttttcctggcttt 616

                                                                       
Query: 417 cctgtcctcagtctgtttaatgtttaacagtagctgcaaagataatatggaaaccgtaag 476
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cctgtcctcagtccgtttaatgtttaacagtagctgcaaagataatatggaaaccgtaag 676

                                                                 
Query: 477 tggaaacacaaaaattcagattcatttttaaaaaggggtgatttcacaacaaaa 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tggaaacacaaaaattcagattcatttttaaaaaggggtgatttcacaacaaaa 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)