BAC Information

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BAC

Clone NameMSMg01-389K11
Chromosome2 (Build37)
Map Location 60,862,216 - 60,862,464
singlet/doubletsinglet
Overlap genenone
Upstream geneBaz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389K11.T7 (MSMg01no389_k11.b1)MSMg01-389K11.TJ (MSMg01no389_k11.g1)
ACCAG491857AG491858
length877736
length of high quality
(start - end)
157 (80 - 236)249 (336 - 584)
definitionCHROMAT_FILE: MSMg01no389_k11.b1 PHD_FILE: MSMg01no389_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:20 2005CHROMAT_FILE: MSMg01no389_k11.g1 PHD_FILE: MSMg01no389_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTGGGCCTTTACTCGAACCTCAAAAAAAAAAAGTGAACAGAGC
TTGAAGAATGACACTAGCGTCACATACACATACACCTGCGCGCACACATG
CATGCACTCCAAAGACACACACATACACAGAGACAGACAGACAGAGATAG
ATAGAGGCAGGGAAAGAGAGAGCAGGGAGGGAGGGAGGGAGGGAGGGACG
CACCTCTCTCCTCCCCCTCTCCCCTTCCCTCTCCCTTTCCCCCCCCCCCC
CTCCCCCTCCCCCCCCCCCCTTTTTTTTCTNCCCCNCCCCCCCCCCCCCC
CCTCCCCTTCCTTCTTCCCTCCCTCCTCTCCTCCTCCCCCGGTCCCCCCT
TCCCTCCCCTCTTTCCCCCTCCCCCTCCTTCCTTCCTCCTCCCCCCCTCT
TCTTCCTCCCTTTCCCCCCTCCCTCCTCTTCCCCCCTCCTTTCCCTCCTC
CCCTCCTCCTCCTCCCCTCTTCCCCTCTCCTTCCCCTTCCCCTCCTTCCC
CCCCTTTTCTTCCTCTCGCTCCCCCCCCTTTCCTCTTTCTCCCTCCCCTC
TTCCCTTGCCCCCTTCCTGTCCCTTCCCTCCCCTTTCCTCCTGTCCTCCC
TTCTCCTTTTTTCCTCTTTCTCCCCGCTCCCGACCTCCCCTTCCCCCCCT
TCCCTCTCCCGCTTTCCCCTCCTCCCTTCCCCCCCTCCCCCCTCTTCCTC
TTCCCTTTCCCTTCCCCTTCCTNTCCTCCCCTTTCCTCCCCCTTCCCCCC
ACCTCCTTCCCTCCCTCCCTCCCCTTCCTCCCCTTATCTCTCCCCTCCTT
CCCCCCCCCCTCCTTCCCTCCCTTCTT
NCCCCCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGAAAAGTTG
TTCTCTTGTCCACTGGTCTTTTTAAGTAATTTGTCAACAGATCTTGGCCA
CCTTAGGTCTGTGCCTGTATGCTAGACCCTATGCATGGTAGGAGGTACAG
GGCTGTAGAAAACATGGGCACGAATGCTCCCATTGTTTTGTATTTCAGTT
TTAGGTAAATATCTATCATTGCTACAGAAGGATCTGATTTAAAAAAATCT
TTTGAAGAAAATTTATTACTTTCTTGCATTTATTGATTTTGCAGAGAAAA
TGGATAATCGCAACTCTAATAATTATTGTTTATTGCAGGCCAGTTCACAT
AAAGTATGAAAACTTCATGAACCCTAAATCATTTAGCTCTGCTACCTTGG
TCAGTACCATTGTGCGAGGAAGAGACTGAAATCTCAAAGGGCTCAGGTTT
CTTGCCTAAGACCGTGCAGTTTCTAAATATGGATTTTGCACATGTGCAGG
TGAATAGGTTCTTGCTGGGCATATTCTTAGAGGAAAATCAGAAAATATGC
TCAAAAAATTAAATGATATAGAATTACATATCTCTTTGTCCTTGCTAATG
CAATCACACTAGAATAGTCTTCATTTTGGAAACAGCTATATTTCACAATC
TTACACCATGGGATGGCACTCTCCTATACATTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_k11.g1 MSMg01no389_k11.g1 CHROMAT_FILE:
MSMg01no389_k11.g1 PHD_FILE: MSMg01no389_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:20 2005
         (249 letters)



>mm_chr2_60862016_60862664
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgcagagaaaatggataatcgcaactctaataattattgtttattgcaggccagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgcagagaaaatggataatcgcaactctaataattattgtttattgcaggccagtt 260

                                                                       
Query: 61  cacataaagtatgaaaacttcatgaaccctaaatcatttagctctgctaccttggtcagt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacataaagtatgaatacttcatgaaccctaaatcatttagctctgctaccttggtcagt 320

                                                                       
Query: 121 accattgtgcgaggaagagactgaaatctcaaagggctcaggtttcttgcctaagaccgt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 accattgtgcgaggaagagactgaaatctgaaagggctcaggtttcttgcctaagaccgt 380

                                                                       
Query: 181 gcagtttctaaatatggattttgcacatgtgcaggtgaataggttcttgctgggcatatt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gcagtttctaaatatggattttgcacatatgcaggtgaataggttcttgctgggcatatt 440

                    
Query: 241 cttagagga 249
           |||||||||
Sbjct: 441 cttagagga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)