BAC Information

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BAC

Clone NameMSMg01-389P07
Chromosome2 (Build37)
Map Location 75,978,327 - 75,978,571
singlet/doubletsinglet
Overlap genePde11a
Upstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1
Downstream geneCyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389P07.T7 (MSMg01no389_p07.b1)MSMg01-389P07.TJ (MSMg01no389_p07.g1)
ACCAG492086AG492087
length750740
length of high quality
(start - end)
64 (89 - 152)245 (83 - 327)
definitionCHROMAT_FILE: MSMg01no389_p07.b1 PHD_FILE: MSMg01no389_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:43 2005CHROMAT_FILE: MSMg01no389_p07.g1 PHD_FILE: MSMg01no389_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCTATXXXXXXXXXXXXXXXXXXGAANTACTACTCCAACACCGCA
GCGNGGAANTNTTTANTTAACTAAACACTACAAGAGGCTATGAACATTGT
TTTGATATTTGGGTGATAACACTAGCGCGACCTCTAACTTCTTAGCATAT
ATCACCTNACCAATTAGAAAGCATGAGCATGAGGGTATTGTGTTATGAAG
TTTACCACACTCTCATATCCCTCCCATTATGGAACTCTGTTCTCCAGGAC
CGATCCGTCTTGAGATCAGAGGAACTATGATCACTTCCACAAGACATCAC
AGGATTATAATTACTAACATTCCCTTGTTTTAGTACATAACCCACTCAGG
AGGAGTTTGCTCACTATTCTCCCCCGGTATTAGCTAGCCCGAATCAGGTA
TGTGAGCCCCTCCCCTCTGAGGATGCATAATCAGCTCATGGTTACATTGG
GTACCAGGAGACATTCTCTCCCATACCCCAGCTGACTCTATCGCACTTCC
CTTTCCTCCCCATCACTCTACCCCCCTGCTCCCACACTTCCCCTCGCTCA
ACTCATTGGTTCATCAACCTACACCTATCCCCAATCCTCATTCTCGTCCC
GTTGTCAGTGCTGTCTCCCATGCCCCCAGACATCTATTCCATTCCTTTTT
ACGCCCCTCCCTCCTCCTTTCGCCCCGCTCCCCCCCCTCCTTCTATCCAC
CACTTCCCCCCACCTTTTCTCCCCTCCCTTCCTCCGTCCCCTCTTCTCTT

NNNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTGGATTCAGGGTA
ATTAAAGCACTTTAACCAAGCCAATAGTGGGTGTTTAACTTTGACTGGGC
ACACCCATTGGTGAGAATGTTTGAACCTACAAGGAAGTGTGTCATATGCA
CATTAACTTTAGATGCTACTTACTTATTACTTACTACTTTTATTTATTAG
ACACTACTAGTTTATTACTTTAAATTGCGTGCATGACTCTGTGTGGGCTG
TGGGACTGTGCACGTGAAGGTGGGTGTTCTTGTAGGCCAGGGTGTCACAG
CCCCGGGCTGGAGTTACAGGCACCTGACGTGGGTGCTGGGAACTGAACTT
GGGTTCTCTGAAAAAGCAGTGCTCTTAACTTTTGAGCCCAAAGGCTCTCC
AGCTCAATACTACACGCATTTACTTTTGCTAAGTTGCTACAGATGTTGTA
AAATCCCTTAACAAACACTTAAAACCAGAGATTGAGAAAGAAAGCATAAA
CAAGAGGATTCAGAAGACTTCCGAGCTCTAACAGAAGTCAGCCATCCACC
ACCATGACACATCAGAGAACAAGCCTCATACTTGAGTGGCCAGAGGAGCT
ACTGCGGCTGGATTGTTCCTGTTGAGTAAAAATGATCTTTGCTTCCAGTG
AAAAAGCCCGTGTGTCATCTTATCACTCGGCCTGTCGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_p07.g1 MSMg01no389_p07.g1 CHROMAT_FILE:
MSMg01no389_p07.g1 PHD_FILE: MSMg01no389_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:43 2005
         (245 letters)



>mm_chr2_75978127_75978771
          Length = 645

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagtggattcagggtaattaaagcactttaaccaagccaatagtgggtgtttaacttt 60
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 201 tgcagtggattcagggtaattaaagcattttaaccaagccaatagttggtgtttaacttt 260

                                                                       
Query: 61  gactgggcacacccattggtgagaatgtttgaacctacaaggaagtgtgtcatatgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgggcacacccattggtgagaatgtttgaacctacaaggaagtgtgtcatatgcaca 320

                                                                       
Query: 121 ttaactttagatgctacttacttattacttactacttttatttattagacactactagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 321 ttaactttagatgctacttacttattacttactacttttatttattagatactactaatt 380

                                                                       
Query: 181 tattactttaaattgcgtgcatgactctgtgtgggctgtgggactgtgcacgtgaaggtg 240
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tattactttaaattacgtgcatgactctgtgtgggctgtgggactgtgcatgtgaaggtg 440

                
Query: 241 ggtgt 245
           |||||
Sbjct: 441 ggtgt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)