BAC Information

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BAC

Clone NameMSMg01-390A07
Chromosome2 (Build37)
Map Location 77,296,122 - 77,296,548
singlet/doubletsinglet
Overlap geneZfp533
Upstream geneOsbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
Downstream geneBC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390A07.T7 (MSMg01no390_a07.b1)MSMg01-390A07.TJ (MSMg01no390_a07.g1)
ACCAG492133AG492134
length771753
length of high quality
(start - end)
---430 (82 - 511)
definitionCHROMAT_FILE: MSMg01no390_a07.b1 PHD_FILE: MSMg01no390_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:48 2005CHROMAT_FILE: MSMg01no390_a07.g1 PHD_FILE: MSMg01no390_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCCCGCAAACAATACCATATTCAGGACGCGCGGANTCTTTCTCCTCC
CCCACCCTTTTTATGGGTATTAATTTCTAGGCGACTCGGCAGGGCGGGAG
AGCACGGTTCGAGCCGCGCCGATTTANAAAACAAGAACCTTTCCAACCCG
TAAGGCCCTTTTGCCTATTAACNNCTCTTTCCCCNCAAAACTTTCACATT
AAACCCCTTTTTAAATTCCCCTTTAAAAAAACCCNCCCCCAAAAAAAAAA
ATCCCCCGGGCCATCCCTAAGACCCCCCCCCCCCCCCCCAAATTTTTCCC
CCCCTTTTAGGGGGCCCCCCCCCCTTTTTTCCCCCCCCACAAAAAAAAAA
AAAAAAACCNNCCCCCTCACACAAACCCCCCCCCCCCCCCCCCCTAAAAA
AAAAAACTTCTTCCCCCCCACTTCCCCCCCCCCCCCACCCCACCACAACC
CCCCCCCCCCCCCCNNCCCCCCCNNCCGCCCCACACACCCCTCCCCCCCC
CCCCCCCNNNCCCCCCCCNCCCCCCCCCCCCCCNNCNCCCCNNCCACTCC
CNCNCTTCCCCCCCCCCCCCCCCCCTCTCCCCCNCTCCCNCNNNCTCNTC
CCCCCCCCCCCCCCCACCCCCCCCTCCTCCCCCCCCCACNNCNNNCCCCC
CNCTCCCCCCCCCCCCCNCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCC
CTCCTCCCCCCCTCTNCCNNCNCCCCCCCCCCACCCCACCCCCCCTCCCC
TAACCCCCCCCGCCGGGGCCG
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAAAAAAAAAAAAAAA
GTCCAACAGTTTAACTGGGGGGGGGGCGGGGGGCGAGATGAAGCAATAAA
CCCTGGCGGGGTGCACTCTACCACGCTCAAATCAAAGGGAAATGGCTGAT
TAACTCCCCAGAGAGTGCACCTAATAAGCTATACACTCTAAATGACGCTA
TCCAGCTCAGGAAGGCAAGTGCTTTGTACACTGACATGACTAACATATAA
AGTGATTAAAAAAATACCCAATTTTCTTTAAAATTATTACTTATAGGAAT
TAAACCCCTTAGAACGTTTTTGTGAATCAAACGTTCTTATTTTAATTTAG
AATTTTTATTTAATTTATGTTAATATTAAAGATTTGTCAATGATTACACA
ATATCCTTTGAATTCTTTATTTTGGGATTTTCCCCAGAGTATTTAAAATG
GAAGTGATCCATTTTCCTCAAATTAATTTCACATTTTATATAAGCCTGTT
AGTTACTTCTCTGGTACGGCGACATAGAAGGGCATCTCTTGACTCTGAGG
TGACTCCCGTTTCACTGGCTCTGCCGGCGTATTTACACGGAAGAACCACG
CGCTCTCAGTGGGGCGCTGTGACCGCCTCCCCCATCCGACCCCCACCTTT
TGAACGGTTTCCTTAAACTACGCTCCAAACTCCTCCTCCCTTCCCGGGGA
ACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_a07.g1 MSMg01no390_a07.g1 CHROMAT_FILE:
MSMg01no390_a07.g1 PHD_FILE: MSMg01no390_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:48 2005
         (430 letters)



>mm_chr2_77295916_77296748
          Length = 833

 Score =  760 bits (393), Expect = 0.0
 Identities = 418/427 (97%), Gaps = 4/427 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   aaaaaaaaaaaa-gtccaacagtttaact-ggggggggggc--ggggggcgagatgaagc 63
           |||||||||||| |||||||||||||||| |||||||||||  |||||| ||||||||||
Sbjct: 207 aaaaaaaaaaaatgtccaacagtttaactgggggggggggcggggggggggagatgaagc 266

                                                                       
Query: 64  aataaaccctggcggggtgcactctaccacgctcaaatcaaagggaaatggctgattaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aataaaccctggcggggtgcactctaccacgctcaaatcaaagggaaatggctgattaac 326

                                                                       
Query: 124 tccccagagagtgcacctaataagctatacactctaaatgacgctatccagctcaggaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tccccagagagtgcacctaataagctatacactctaaatgacgctatccagctcaggaag 386

                                                                       
Query: 184 gcaagtgctttgtacactgacatgactaacatataaagtgattaaaaaaatacccaattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcaagtgctttgtacactgacatgactaacatataaagtgattaaaaaaatacccaattt 446

                                                                       
Query: 244 tctttaaaattattacttataggaattaaaccccttagaacgtttttgtgaatcaaacgt 303
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctttaaaattaatacatataggaattaaaccccttagaacgtttttgtgaatcaaacgt 506

                                                                       
Query: 304 tcttattttaatttagaatttttatttaatttatgttaatattaaagatttgtcaatgat 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcttattttaatttaaaatttttatttaatttatgttaatattaaagatttgtcaatgat 566

                                                                       
Query: 364 tacacaatatcctttgaattctttattttgggattttccccagagtatttaaaatggaag 423
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tacacaatatcctttgaattttttattttgggattttccccagagtatttaaaatggaag 626

                  
Query: 424 tgatcca 430
           |||||||
Sbjct: 627 tgatcca 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 833
Length adjustment: 9
Effective length of query: 421
Effective length of database: 824
Effective search space:   346904
Effective search space used:   346904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)