BAC Information

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BAC

Clone NameMSMg01-390C05
Chromosome2 (Build37)
Map Location 178,507,489 - 178,507,914
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390C05.T7 (MSMg01no390_c05.b1)MSMg01-390C05.TJ (MSMg01no390_c05.g1)
ACCAG492225AG492226
length768745
length of high quality
(start - end)
56 (89 - 144)436 (77 - 512)
definitionCHROMAT_FILE: MSMg01no390_c05.b1 PHD_FILE: MSMg01no390_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:57 2005CHROMAT_FILE: MSMg01no390_c05.g1 PHD_FILE: MSMg01no390_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAACTTATAATTTGCCGGCGGTATAAGAATCACTATAGTTCCACAACCC
GCGGAATTCATTGGCCTTTCCCCCATCCCACCCTCAGCAATGGCCACCCT
CATGGAGAAGAGGCTGAGAACCCTAGACTTGAGGTTGGGTGCTACAGCAG
TCCTAATCCTGCTGAAGGCTGGTGGGCTCCTGGAGAGCCTCTGGTCTTCA
GTCCACCTTGGGAAGCTGGAGAAGCTAGTTCAGAGGTCAGAGAAACTTGG
TTGCAGCAGCTACAGCAGCAGCAGCAGCAGCAGCAGCAACGAAACAAACT
TGCTCACCAGCCCCAAATGCAGACAGTTTATGTTTGCCTTGGACCTCCCT
GTATTTGGGGCTGCTTCCTGAAGGTGCTACGTACTCTAAGGGTTCCTCCC
AGTGAATCCTTGCAAGACCCTCCCCAAGGCATGTTTTTTAGCGATTCCCC
ATCCAACCCCAGCTGACTATAACACCACCCCTCCCAGTACAAAACCTGTT
TCTCGGCCCCCGACCCCTTTCCCAGAATCTTAGTTCCAAGCCCGCTCCTT
CCCCTCCCAAAGCACACGCCCCCCCGCCCTGCCTTGCCCTTCCCCCCCGC
CTCCACCCCCCAGCCCCCCCAACGGTCCTGAGGCCCCCCCTCCCCCCCCC
CCTCCCGGGTGCCCCAAATTCCTCCCGCGCCCCCTTTTTTTCTCCCCCCC
CCCTGTCTTTCCCGCCCCCCTCTCCCCCCCCATTCCACACTCTTCCTCTC
AGCCCCTCGCCCTTCCTN
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXATTTCAAAAACACTGGGTCTGAGAGTGAGCTGTGTAGA
GCTAGACATAATGAAAGAATCCCCCTGTAAATTGGCTTTTATCTGTTAAG
GATAAAGTTGGACTTTCTTTACTCCTGCTCTGGCCAAACACCAGGGGTAT
CTCATCATCATCATCATCATCATCATCAAAATCTTTATATTGATCACAAC
ATCATATATATGCTGATTCTACATGGTAGTAGTTGTGAGCCTCCTCCATA
AGAAGCCTAGCTTGTGGGAACACTTGTTTTTCCCACTGTGCCTCCCTCCT
TACTCTGTTGTGTATGACCTGTGAGGGAGCAAATGCCCGGAGTGTACCCC
AGATCAACAGTGCATGTGGTCTCCTCCCTACTTACTGATACAGTCAGTCT
GGGAGTGCCGAGGGCCATGCAGGAGGGAGGACAAATGGCTTCAGAACTCA
TGGAATGCAGCCCACGGGTTACCATAGCCACATGGGTGGGCCTTTGGTGT
GGCACAGCCCCGAGGACTGCGTCCTGAGGACTTTGTGCCGTTGGGGAGAA
CTGCTCTGCTTGCTACCCTCACCTCCCTCTGATTCGATTATATGATAACT
TTTAAGGGAGCTTTCTTCCTCTGAATGTGCATAATTTTCCGGCTCTTAAA
CTAAACCTTGGCTTGATCTCTCTTGACGCCTTCGCTTGTCAGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_c05.g1 MSMg01no390_c05.g1 CHROMAT_FILE:
MSMg01no390_c05.g1 PHD_FILE: MSMg01no390_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:57 2005
         (436 letters)



>mm_chr2_178507289_178508124
          Length = 836

 Score =  739 bits (382), Expect = 0.0
 Identities = 418/440 (95%), Gaps = 18/440 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtctgagagtgagctgtgtagagctagacataatgaaagaatccccctgtaaattggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtctgagagtgagctgtgtagagctagacataatgaaagaatccccctgtaaattggc 260

                                                                       
Query: 61  ttttatctgttaaggataaagttggactttctttactcctgctctggccaaacaccaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttatctgttaaggataaagttggactttctttactcctgctctggccaaacaccaggg 320

                                                                       
Query: 121 gtatctcatcatcatcatcatcatcatcatcaaaatctttatattgatcacaacatcata 180
           |||||         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatc---------tcatcatcatcatcatcaaaatctttatattgatcacaacatcata 371

                                                                       
Query: 181 tatatgctgattctacatggtagtagttgtgagcctcctccataagaagcctagcttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tatatgctgattctacatggtagtagttgtgagcctcctccataagaagcctagcttgtg 431

                                                                       
Query: 241 ggaacacttg----tttttcccactgtgcctccctccttactctgttgtgtatgacctgt 296
           ||||||||||         |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 432 ggaacacttgccac-----cccactctgcctccctccttactctgttgtgtatgacctgt 486

                                                                       
Query: 297 gagggagcaaatgcccggagtgtaccccagatcaacagtgcatgtggtctcctccctact 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gagggagcaaatgcccggagtgtaccccagatcaacagtgcatgtggtctcctccctact 546

                                                                       
Query: 357 tactgatacagtcagtctgggagtgccgagggccatgcaggagggaggacaaatggcttc 416
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 547 tactgatacagtcagtctgggagtgccgagggccacgaaggagggaggacaaatggcttc 606

                               
Query: 417 agaactcatggaatgcagcc 436
           |||||||| |||||||||||
Sbjct: 607 agaactcacggaatgcagcc 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)