BAC Information

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BAC

Clone NameMSMg01-390E06
Chromosome2 (Build37)
Map Location 130,374,280 - 130,513,788
singlet/doubletdoublet
Overlap genePtpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11
Upstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
Downstream gene4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390E06.T7 (MSMg01no390_e06.b1)MSMg01-390E06.TJ (MSMg01no390_e06.g1)
ACCAG492322AG492323
length775736
length of high quality
(start - end)
335 (79 - 413)245 (82 - 326)
definitionCHROMAT_FILE: MSMg01no390_e06.b1 PHD_FILE: MSMg01no390_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:07 2005CHROMAT_FILE: MSMg01no390_e06.g1 PHD_FILE: MSMg01no390_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,374,280 - 130,374,614)(130,513,544 - 130,513,788)
sequence
NCCCTCCGAATTTGCGGGCGCTAAACGAATCACTATTTCAAGAGACACCG
CGGAATTCCTAAGTGTTCCTAACCCCAGACATCAGTGTCACAACTGTAAG
GATCTATATAGTGTCTCTTCATACATCCCATTAAATCCCAGTTCTGTCAC
ATGGCCGAATGTATTTCATGCCTCACACACCTTACACTCCTCCCTGCGCT
AGCTTTTTCACCTTCAAACTCATCATATAGCATTAGTCTACAGCCCGGGT
TCAGTCGGGACCAAATAAAACTACCTTAACCCACTGTTCCCATCAGCCAG
CCAAAAGGGCTACATCCTCCTTCCCCATTCCAGCTTGGAGGGCCGTCTTT
ATCTTCTGCCTCCTCCCCTGTGAGTAACTGATTTTATGACCTAAAGCTGC
TAGGTGTGATCTTAAGTACCTATTTATTAGTTTGATGGGTGGCTGGCCGC
CCCCCCCCCCCCCCCCCCCNCCTCCCCCCCCCCTCTTCCCCCCCCCTCCC
CCCCTTCCTCCTCCCTCCCCCTCCCCTCCCCTCCCCCCCCTCCCCCTCCT
CTCCCCCCCCCCTCCTCTTCTCTCTCCCCCCCCCCTCCTTCTTCCCCCTC
CCTTTCCCCCTTTCTCCCTCCCCCTCCCCCCTTCTCCTTCTCCCCNCCCC
TCCTCTCCTTCCGCCCCCCCCTCTCCTCTTCCCTCCCCCCTTCCCCCTCC
CCCTGCTCTCTCCTCCTTTCCCTCCTCCCCCTTTCCCTCTTCCCCTTTCC
CTCCCCTTTCTCCCCCTTCCTTCTC
NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAGGCTCTGGTGCATC
AGAGACAGCTGCTCACCATGATGATGCCAAGAGCCGCAGGGCACAGCATG
AGCTCCCTCCATACTCACAGACACCCTCAGGTACAGGAGAGAGGCAGTGT
GGTGGGAGCGGCATGGGCCAACCAGGGCTAACTCGGTCTATCTTTTCTCC
CAGCCCCCGAAATGCAAGGACTTTTTCCCTTTTGGAAAGGGCATCTGGAT
GGATATCATGCGCAGGTTTCCTGTGTATTTTTTGGACTTCACCGATGGTG
TGTGCCCAGCCAGAGCTTATTCTTTCAGGCCACCAGGCCACGTGTATGTG
CCTGCCGTGCATCCCTGGCAAATGCTGTCTGTCTTGCATTCCTAGGCATC
ATTGGGAAAAGCAAGAGCGTGCGCAAATATGTCATCACCACACTCTTCCT
CTACTTCGCCTGCCTCCTACCGACCATTGCTTTTGGATCCCTCAACGATG
AGAAAACTAACGGCGTCATCGGTAAGGGGCTGTGTGTGCTAAGCATGTCC
CCCGTTCTTTCCTGTTTTTACTCGCCCTCTCTCTTACCCCCCCCTTCCCC
CCCCTTCTTCTTTTTTTTTGTACTTCCTCTTCTCTCCCCTGCTTGTTCCC
CTTTCTCTCCCCTCCCACCTTTCCTCCCGCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_e06.b1 MSMg01no390_e06.b1 CHROMAT_FILE:
MSMg01no390_e06.b1 PHD_FILE: MSMg01no390_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:07 2005
         (335 letters)



>mm_chr2_130374080_130374814
          Length = 735

 Score =  617 bits (319), Expect = 0.0
 Identities = 331/335 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatcagtgtcacaactgtaaggatctatatagtgtctcttcatacatcccattaaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 acatcagtgtcacaactgtaaggatctatatagtgtctcttcatacatttcattaaatcc 260

                                                                       
Query: 61  cagttctgtcacatggccgaatgtatttcatgcctcacacaccttacactcctccctgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttctgtcacatggccgaatgtatttcatgcctcacacaccttacactcctccctgcg 320

                                                                       
Query: 121 ctagctttttcaccttcaaactcatcatatagcattagtctacagcccgggttcagtcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagctttttcaccttcaaactcatcatatagcattagtctacagcccgggttcagtcgg 380

                                                                       
Query: 181 gaccaaataaaactaccttaacccactgttcccatcagccagccaaaagggctacatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccaaataaaactaccttaacccactgttcccatcagccagccaaaagggctacatcct 440

                                                                       
Query: 241 ccttccccattccagcttggagggccgtctttatcttctgcctcctcccctgtgagtaac 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttccccagcccagcttggagggccgtctttatcttctgcctcctcccctgtgagtaac 500

                                              
Query: 301 tgattttatgacctaaagctgctaggtgtgatctt 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 tgattttatgacctaaagctgctaggtgtgatctt 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no390_e06.g1 MSMg01no390_e06.g1 CHROMAT_FILE:
MSMg01no390_e06.g1 PHD_FILE: MSMg01no390_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:07 2005
         (245 letters)



>mm_chr2_130513344_130513988
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaggctctggtgcatcagagacagctgctcaccatgatgatgccaagagccgcaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggaggctctggtgcatcagagacagctgctcaccatgatgatgccaagagccgcaggg 386

                                                                       
Query: 61  cacagcatgagctccctccatactcacagacaccctcaggtacaggagagaggcagtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacagcatgagctccctccatactcacagacaccctcaggtacaggagagaggcagtgtg 326

                                                                       
Query: 121 gtgggagcggcatgggccaaccagggctaactcggtctatcttttctcccagcccccgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgggagcggcatgggccaaccagggctaactcggtctatcttttctcccagcccccgaa 266

                                                                       
Query: 181 atgcaaggactttttcccttttggaaagggcatctggatggatatcatgcgcaggtttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcaaggactttttcccttttggaaagggcatctggatggatatcatgcgcaggtttcc 206

                
Query: 241 tgtgt 245
           |||||
Sbjct: 205 tgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)