BAC Information

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BAC

Clone NameMSMg01-390G07
Chromosome2 (Build37)
Map Location 111,202,818 - 111,203,232
singlet/doubletsinglet
Overlap genenone
Upstream gene1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282
Downstream geneOlfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390G07.T7 (MSMg01no390_g07.b1)MSMg01-390G07.TJ (MSMg01no390_g07.g1)
ACCAG492415AG492416
length755745
length of high quality
(start - end)
145 (182 - 326)433 (81 - 513)
definitionCHROMAT_FILE: MSMg01no390_g07.b1 PHD_FILE: MSMg01no390_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:18 2005CHROMAT_FILE: MSMg01no390_g07.g1 PHD_FILE: MSMg01no390_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACACGCAT
CCGCGCGAATCCAACTCTATCCACAAAAATAACCGAAAGCAACAGTTACT
TTTCCTTCATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGA
CAGACTAACAGACTGGCTACATACCCCAGGACAGGGGAACACCAGGGCCA
AGAAATGGAAGTGGGTGAGTAGGGAAGCAGGACCGGGGGGATATAGGGGA
CTTTCGGGATATCATTTGAAATGGAAATGAAGAAAATATTTAATAAAAAT
TTAAAAAAAGAAAAAAAAAACAATCACATGATCTTCCTCATTAGATGCTG
AGAAAGCATTTGACAAAATCCAACACCCATTCATAATAAAAGTCTTGGAA
AGATCAGGAATTCAAGGTCCACACATAAACCTAATAAAAGCAATATAAAG
CAAACCAGTAGCTAACATCCAACTAAATGGAGAGAAACTTGAAGCAATCC
CACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCAACTC
AATATAGAACCTTAACGTCCTGGCCCGAGCAATTAGATCACCCCAGGAGA
CCCAGGCGCATAAAATTGCACAGGACGAAGCCCAAGCATCACCATTTACC
GATGACACGATAGCCCCTCCCTTTCGCTCCCAACAACTTCCCCCACCCAC
CCTCCTAAAACCCGCACCAACAGCCCCCCGTTCCGTACGCCGGCCCCACC
TACCT
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACCCCATTTTTAAATTG
GATTATTTGGTTTGTGGATGTCTGTACTCATTTGCTCTTTCTCTAACCTG
CCAACTTCCCAATAATGACACAGAGACCTTCTTTTTTTTCTTCTTCTTTT
TTTTAATTATAAAAGTTTGGACTTAGCTTGGCAGACCCTCAGCTAGCTCA
TCTAAGTAAACCTGGCGATCAAGCACTGTCCCACCATGTCGCTTGTTAGT
TACCTCCCCTTCAGTACTGGTAACCACTTCTTTTCTCCAATGTGGTTGGT
GAAATCACTTGCTTCTGTGTCTGACTAGCAAATCTCCCACATCAGAGTCT
TTCCCAAAGTTCTTACCTTTCCTGAAAATCACATTTCACATTAATGCTAT
TCTTGACAGATTGAATTTTTGCCTGGTTTACCTAGTGCATGTTTTATTTT
TGACTTGCCCATGGTACTGTGGAGGGTAGATATACATACTGAGTTCATTA
ACATTTAAATAATGACTCACTAATATAGATATGATTAATGCATTATTTAC
TGCAAAAAGTGTACACATATGGAAGTAAAATATGACAACCCATGCCTATT
GCCAACACATAACTTCCACTAAAATAACTTCTCCACAAAAGAAGATATCC
GTTCTTAACACACCATTTCTCCTTACACCTCCCCAAATTTCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_g07.g1 MSMg01no390_g07.g1 CHROMAT_FILE:
MSMg01no390_g07.g1 PHD_FILE: MSMg01no390_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:18 2005
         (433 letters)



>mm_chr2_111202607_111203439
          Length = 833

 Score =  576 bits (298), Expect = e-169
 Identities = 393/436 (90%), Gaps = 24/436 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataccccatttttaaattggattatttggtttgtggatgtctgtactcatttgctcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cataccccatttttaaattggattatttggtttgtggatgtctgtactcatttgctcttt 271

                                                                       
Query: 61  ctctaacctgccaacttcccaataatgacacagagaccttcttttttttcttcttctttt 120
           |||||||||||||||||||||||||||||||||||||||| ||||||||          |
Sbjct: 272 ctctaacctgccaacttcccaataatgacacagagacctt-tttttttt----------t 320

                                                                       
Query: 121 ttttaattataaaagtttggacttagcttggc--agaccctcagctagctcatctaagta 178
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 321 ttttaattataaaagtttggacttagcttggctcagaccctcagctagctcatctaagta 380

                                                                       
Query: 179 aacctggcgatcaagcactgtcccaccatgtcgcttgttagttacctccccttcagtact 238
           |||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 aacctgaccatcaagctctgtcccaccatgtggcttgttagttacctccccttcagtact 440

                                                                       
Query: 239 ggtaaccacttcttttctccaatgtggttggtgaaatcacttgcttctgtgtctgactag 298
            ||| ||| ||| ||||||| ||| || ||||||||||||        |||||||||| |
Sbjct: 441 agta-ccagttcctttctcctatg-ggctggtgaaatcac--------gtgtctgactcg 490

                                                                       
Query: 299 caaatctcccacatcagagtctttcccaaagttcttacctttcctgaaaatcacatttca 358
           ||| ||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 491 caagtctcccacaacagactctttctcaaagttcttacctttcctgaaagtcacatttca 550

                                                                       
Query: 359 cattaatgctattcttgacagattgaat-ttttgcctggtttacctagtgcatgttttat 417
           ||||||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 551 cattaatgctattgttgagagattgaatattttgcctggtttacctagtgcatattttat 610

                           
Query: 418 ttttgacttgcccatg 433
           ||||| ||||||||||
Sbjct: 611 ttttggcttgcccatg 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)