BAC Information

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BAC

Clone NameMSMg01-390I11
Chromosome2 (Build37)
Map Location 59,211,504 - 59,211,749
singlet/doubletsinglet
Overlap genenone
Upstream geneAcvr1, LOC674940, Upp2, BC062650, Pkp4
Downstream geneLOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390I11.T7 (MSMg01no390_i11.b1)MSMg01-390I11.TJ (MSMg01no390_i11.g1)
ACCAG492518AG492519
length746735
length of high quality
(start - end)
243 (82 - 324)173 (333 - 505)
definitionCHROMAT_FILE: MSMg01no390_i11.b1 PHD_FILE: MSMg01no390_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:28 2005CHROMAT_FILE: MSMg01no390_i11.g1 PHD_FILE: MSMg01no390_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTCAATTTGCGGCGCTAATAGAATACCATATTCACACAACCGCG
GNAATCCAACATTTCACCCACAACCCCCATGCATGTTCTGTGGCATGGTT
CTCCCTCCTCTCCCCTCCCCTCCCCAGCACACACAGAAAAATACAGAAAT
AAATGTAACCATAAATTAAAGTTAGGTTGGTAGTTTCTTGTGAAACAAAA
AAAAAAATAGTAAATGAGAAGATAAGTAGAGTCTTCCAGGAATCATCTTC
CATCCTTTGACCCAGGAAACACAGCTGTTCACACATCAAAATACCCCCCC
CATAAGACCTAAGGAAATCAGGTTATTGATCTGCTTTTAGTATAACAAAG
CGAATGATGTTCTGAATGAGGCTGGGGAGAGAAATGTCTTCAACCTCCTA
GACCAGAAAGAAACACATATTACTTAGAGAGTGCAAAGAGAAGAAAAATT
CAGCCCTGAGATTTGAAACACAGTACCAGACCCATCACAAGGAAACCCAG
TGCTTGGCAAAGCTCCACAGCCCCTCTCCTCAGGCCAATATCTATGTATA
AGCCAATACAACTGAGCTAAGCCAGAAAGCTGACAGTGTCCTCTATTCCT
ACACACACACACACACACACCCANCCACACACACCCCCCCCACCCCCACC
CACAACCCTTTTTTTTTTTATCCCACACAACATCCCCCCCCCCCCTACAA
CAAACAACCACCACCCCTTCCCCCCTGGACACCCCCCCCCACGCCN
NNNCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGACCCTACGCAGCTTCTTCTGTACCATG
CCTGCCTGGATGCTGCCATGCTCTTACCTTGATAATAATGGACTGAACCT
CTGAACCTGTAAGCCAGCTCCAATTAAATGTTGTCCTTGTAAGACTTGCC
TTGGTCATGGTGTCTGTTCACAGCAGTAAACCCTAAGACGTCCTTCATCT
ATGGACAGATAGAACGATGCTCTTCCTCTTGTCTCACACCCCTTGGGTGA
CAGGACCCTCTTGTCATTTCTCTTATTTTTCCCATGTTCCTCCCTTCAGA
CCCAAATCCTTGGCACCCCCCTGGATTCTTTACATTGAGCTTCATCCTTT
GCTGTTCATCTCAGGCTGGAGCTTCTACTGTATGCTCACTACTCTTCCTT
AAGTAGCTTTGATGAGTCTTAGCAGTCACTTTATCCTGAAGGTTTCTGCT
GCGGGAGACATGTGTGATTGCATCCATTTGACAATGTTCACAGAGGGTAA
GTGGCTTGTTTAAGGTTTCAGAAACAGCAAGGGACAGAAGCAAAACCCTG
TCTCCTAAATCCTAGAATTTCCTGACATTGCCTCACAATACTTGGGAGCT
GGGCTATCCCCTTTTGTAATGGTTTAGACTATTTTACCGGATGCTGCTGA
AATCGAACCAAAGCTTGATACTGCCCCCAATTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_i11.b1 MSMg01no390_i11.b1 CHROMAT_FILE:
MSMg01no390_i11.b1 PHD_FILE: MSMg01no390_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:28 2005
         (243 letters)



>mm_chr2_59211311_59211951
          Length = 641

 Score =  375 bits (194), Expect = e-108
 Identities = 231/248 (93%), Gaps = 9/248 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgttctgtggcatggttctccctcctctcccctcccctccccagcacacacagaaaaa 60
           ||||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||
Sbjct: 194 catgttctgtggcatggctctccctcctcttccctcccctccccagcaaacatagaaaaa 253

                                                                       
Query: 61  tacagaaataaatgtaaccataaattaaagttaggttggtagtttcttgtgaaacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tacagaaataaatgtaaccataaattaaagttaggttggtagtttcttgtgaaacaaaaa 313

                                                                       
Query: 121 aaaaaa-------tagtaaatgagaagataagtagagtcttccaggaatcatcttccatc 173
           ||||||       |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 314 aaaaaaaaaaaaatagtaaatgagaagataagtagagtcctccaggaatcatcttccatc 373

                                                                       
Query: 174 ctttgacccaggaaacacagctgttcacacatcaaaataccccccccataagacctaagg 233
           |   |||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 374 caaagacccaggaaacacagctgttcacacatcaaaatacccccc--ataagacctaagg 431

                   
Query: 234 aaatcagg 241
           ||||||||
Sbjct: 432 aaatcagg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 641
Length adjustment: 9
Effective length of query: 234
Effective length of database: 632
Effective search space:   147888
Effective search space used:   147888
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)