Query= MSMg01no390_j23.b1 MSMg01no390_j23.b1 CHROMAT_FILE:
MSMg01no390_j23.b1 PHD_FILE: MSMg01no390_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:36 2005
(152 letters)
>mm_chr2_111287690_111288242
Length = 553
Score = 219 bits (113), Expect = 8e-62
Identities = 143/153 (93%), Gaps = 1/153 (0%)
Strand = Plus / Minus
Query: 1 tctgagag-attatgattagtctatgcacagctactctcatctccctccaatctcaatta 59
|||||||| | |||||||| ||| |||||||| ||||||||||||||||||||||||| |
Sbjct: 353 tctgagagaactatgattattctgtgcacagccactctcatctccctccaatctcaatga 294
Query: 60 actactttactatattgtctgtatcttgagaaaatagtacacccaataatataatcagat 119
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 293 actgctttactatattgtctgtatcttgagaaaatagtacacccaataatacaatcagat 234
Query: 120 aacattagagtaagcttagtgacctatgagtat 152
|||||||||||||| |||||||||||| |||||
Sbjct: 233 aacattagagtaagtttagtgacctataagtat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 553
Length adjustment: 8
Effective length of query: 144
Effective length of database: 545
Effective search space: 78480
Effective search space used: 78480
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_j23.g1 MSMg01no390_j23.g1 CHROMAT_FILE:
MSMg01no390_j23.g1 PHD_FILE: MSMg01no390_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:36 2005
(483 letters)
>mm_chr2_111037275_111038153
Length = 879
Score = 884 bits (457), Expect = 0.0
Identities = 475/483 (98%), Gaps = 4/483 (0%)
Strand = Plus / Plus
Query: 1 tctgaagtcttctaatcatgaatgtctttcaagcttcctagtgaatacctcttttctatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaagtcttctaatcatgaatgtctttcaagcttcctagtgaatacctcttttctatt 260
Query: 61 tgtattaaatattcattcttcataaaattctattgaatatatatatatatccttgtgtgt 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgtattaaatattcattcttcataaaattctattgaatatatatat----ccttgtgtgt 316
Query: 121 ttctgctttcattatttattaacttttatgacttcaatattacctatttaaggatcataa 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttctgctttcattatttatgaacttttatgacttcaatattacctatttaaggatcataa 376
Query: 181 agttaaaagtgtgaaaccataaatatattcatacttgataatacatgacttcatttatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agttaaaagtgtgaaaccataaatatattcatacttgataatacatgacttcatttatct 436
Query: 241 atggttcatagaaacaaagagttccttaatgaaggagttaatgccttccaaaagtgataa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttggttcatagaaacaaagagttccttaatgaaggagttaatgccttccaaaagtgataa 496
Query: 301 aacataaggaattttgttgtagttcttagaacatgtatgaactaaatgcacattttattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aacataaggaattttgttgtagttcttagaacatgtatgaactaaatgcacattttattt 556
Query: 361 tcatgcaaacttatatcaccatgccatgcttaattgaagtacaattaaatactttgccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 557 tcatgcaaacttatatcaccatgccatgcttaattgaagtacaattaaatattttgccat 616
Query: 421 ttcttatgatcatctgcctcatttccatgcatttcatatttaaatagtatctttcttatt 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttcttatgatcatctgccttatttccatgcatttcatatttaaatagtatctttcttatt 676
Query: 481 ctt 483
|||
Sbjct: 677 ctt 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 879
Length adjustment: 10
Effective length of query: 473
Effective length of database: 869
Effective search space: 411037
Effective search space used: 411037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
