NNCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGACCAT
CCGCGGAATTCTCACCTGTTGCATACCCAATGGCAGAGAAGCACCTAAAA
AATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTC
CTCAGAAAACTGGATATAGTACTACCTTATTATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGG
CCAAATGGATGGACCTGGATGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGGAACTCCCACAATATGTACTCACTGATAAGTGGATATTAGCCCCA
AACCTAAGATACCCTATATATTAGATACCATTTCCCAAACCCCTGAAACT
CCAGAAAAATGAAGACCGAAGTGCGAACCCTATG

NNNNNCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTAAGACA
CACCAGAGCTAGTATATGTGGGCTTATCAGAGAGAGCCTCACTGCATGGT
ATTGACAGTCGCCATATAAACCAATTTAATGAGTTTCAAAGCTATTCTCT
TCCAAATATTGCCAGGGAATTTAAATAAGTTCACAGGGTGGTTTTTGAGA
AACACCTGACAGGATCATAAGTTTTCAACTCTAAATCACAGGGAAACAAG
AAGTTAAGGTTACTTTGTAAACAGAGTTATTATCATATTTGTGAGTCCCT
ACTGCAAGAACCCCCTCCCCACCCCCCCAAAAAAAAGGAAAAAGAAAGAA
AGAAAGGAAGGAAGGAAGGAAGGAAGAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGGAAAGAAAAGAAAAGAAAGGAAAAGAAAAGAAA
AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAT
AANAAAACTGTCTGGAAGAATAATGGGAAACTTTTTTTTTTTCATTGAAT
TTCTCTCTCTCTATCTATCTCTATCTATATATATATATATATAAAATTTT
TATTAGGAATTTTCTTCATTTACATTCCCAGTGCTATCCCAAAAGC

Query= MSMg01no390_l12.g1 MSMg01no390_l12.g1 CHROMAT_FILE:
MSMg01no390_l12.g1 PHD_FILE: MSMg01no390_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:43 2005
         (535 letters)



>mm_chr2_98928332_98929267
          Length = 936

 Score =  629 bits (325), Expect = 0.0
 Identities = 458/517 (88%), Gaps = 38/517 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaagaaggtaagacacaccagagctagtatatgtgggcttatcagagagagcctcact 60
           |||||||||||||||||||||||         ||||||||||||||||||||||||||||
Sbjct: 511 agtaagaaggtaagacacaccag---------atgtgggcttatcagagagagcctcact 461

                                                                       
Query: 61  gcatggtattgacagtcgccatataaaccaatttaatgagtttcaaagctattctcttcc 120
           |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcatggtaatgacagtcaccatataaaccaatttaatgagtttcaaagctattctcttcc 401

                                                                       
Query: 121 aaatattgccagggaatttaaataagttcacagggtggtttttgagaaacacctgacagg 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 400 aaatattgccagggaatttaaataagatcacagggtggtttttgagaaacacctgacaga 341

                                                                       
Query: 181 atcataagttttcaactctaaatcacagggaaacaagaagttaaggttactttgtaaaca 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atcataagttttcaactctagatcacagggaaacaagaagttaaggttactttgtaaaca 281

                                                                       
Query: 241 gagttatt-atcatatttgtgagtccctactgcaagaaccccctccccacccccccaaaa 299
            ||||||| |||||||||||||||||||||||||||||||||||||||    ||| ||||
Sbjct: 280 aagttattcatcatatttgtgagtccctactgcaagaaccccctcccc----cccaaaaa 225

                                                                       
Query: 300 aaaaggaaaaa----gaaagaaagaaaggaaggaaggaaggaaggaag-aagaaagaaag 354
           |||||||||||    ||||||||||||| ||| ||| ||||||||||| ||| ||| |||
Sbjct: 224 aaaaggaaaaataaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaag 165

                                                                       
Query: 355 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 414
            ||| ||||||||||||||| ||| ||| ||| ||| ||| ||| ||||||||||||  |
Sbjct: 164 gaaggaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaagaaagaaaga--g 107

                                                                       
Query: 415 aaagaaagaaagaaagaaaggaaagaaaagaaaagaaaggaaaagaaaagaa-aagaaaa 473
           |||   |||||   ||||  ||||||||||||||||||   |||||||| || |||||||
Sbjct: 106 aaa---agaaa---agaa--gaaagaaaagaaaagaaa---aaagaaaa-aagaagaaaa 59

                                                
Query: 474 gaa-aagaaaagaaaagaaaagaaaagaa-aagaaaa 508
            || || |||||||||||||||||||||| |||||||
Sbjct: 58  -aagaa-aaaagaaaagaaaagaaaagaataagaaaa 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space:   486150
Effective search space used:   486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)