Query= MSMg01no390_l21.b1 MSMg01no390_l21.b1 CHROMAT_FILE:
MSMg01no390_l21.b1 PHD_FILE: MSMg01no390_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:45 2005
(273 letters)
>mm_chr2_54332297_54332964
Length = 668
Score = 400 bits (207), Expect = e-116
Identities = 255/275 (92%), Gaps = 13/275 (4%)
Strand = Plus / Plus
Query: 1 aggtaaaaa-taagttcatgagctcttttagaggtacaaggtgacaattttgatgtgcta 59
||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aggtaaaaaataa-tt-atgagctcttttagaggtacaaggtgacaattttgatgtgcta 262
Query: 60 atggaactaaaattcttatcttgagcaagaagtgaaaaatttatatattaaaaaaa-agt 118
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 263 atggaactaaaattcttatcttgagcaagaagtgaaaaatttat----taaaaaaatagt 318
Query: 119 tgaaattttaggttgccaaaacttttggagaacagtcatccaagtgctttgtaagaaatt 178
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 319 tgaaattttaggttgtcaaaacttttggggaacagtcatccaagtgctttgtaagaaatt 378
Query: 179 catagaaatatgaaatattacagtcacaggaaatccattagggctctgttgtgtacactt 238
||| ||| || | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 379 catggaactaggg----ttacagtcacgggaaatccattagggctctgttgtgtacactt 434
Query: 239 cactttcaacaacacaggtagcctgggggaagaac 273
|||||||||||||||||||||||||||| ||||||
Sbjct: 435 cactttcaacaacacaggtagcctgggg-aagaac 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 668
Length adjustment: 9
Effective length of query: 264
Effective length of database: 659
Effective search space: 173976
Effective search space used: 173976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no390_l21.g1 MSMg01no390_l21.g1 CHROMAT_FILE:
MSMg01no390_l21.g1 PHD_FILE: MSMg01no390_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:45 2005
(528 letters)
>mm_chr2_54461067_54461994
Length = 928
Score = 758 bits (392), Expect = 0.0
Identities = 470/528 (89%), Gaps = 49/528 (9%)
Strand = Plus / Minus
Query: 1 agtgcctaagtctccctcgttctactcctctgctcccttcttttcaccatgttgtacagt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 agtgcctaagtgtccctcgttctactcctctgctcccttcttttcaccatgttgtacagt 838
Query: 61 atctcctatggagctgcctgcattcagaccctaaccttcgttaacacctgtcctttccca 120
|||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 837 atctcctatggagctggctgcattcagaccctaaccttcattagcacctgtcctttccca 778
Query: 121 ttttctaaaactagacttctctgtgaagaaaaccaatatctattctgacacagcccatgg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 777 ttttctaaaactagacttctctgtgaagataaccaatatctattctgacacagcccatgg 718
Query: 181 agtagtgatcagactcaaacataaacacactctcaggaaagctgcagcaacttccttcat 240
||||||||||||||||||
Sbjct: 717 agtagtgatcagactcaa------------------------------------------ 700
Query: 241 gatagataataaatgtttgaaatctcttccacaggaaatctctttttgagaggtacattc 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 699 -------aataaatgtttgaaacctcttccacaggaaatctctttttgagaggtacattc 647
Query: 301 ctgttttcatcttttggacaattcagatgccacttgtttgataggcttgtccatgaaatc 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 646 ctgttttcatcttttggacaattcagatgccacttgtttgacaggcttgtccatgaaatc 587
Query: 361 ttgttcaacacaagcctggtacattggacgctgtgttattacatagccctcaaacaggat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 586 ttgttcaacacaagcctggtacattggacgctgtgttattacatagccctcaaacaggtt 527
Query: 421 tctatcttttaatctaagagttctgtaagttagggttattattattgtgtgagggtattg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tctatcttttaatctaagagttctgtaagttagggttattattattgtgtgagggtattg 467
Query: 481 tgtacaagtctatatgcattgtgagtgtgtgtgtgtgtgtgtgtgtgt 528
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 466 tgtacaagtctatatgcattgtgtgtgtgtgtgtgtgtgtgtgtgtgt 419
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
