BAC Information

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BAC

Clone NameMSMg01-390M10
Chromosome2 (Build37)
Map Location 33,021,402 - 33,021,853
singlet/doubletsinglet
Overlap geneRalgps1
Upstream gene5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
Downstream geneAngptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390M10.T7 (MSMg01no390_m10.b1)MSMg01-390M10.TJ (MSMg01no390_m10.g1)
ACCAG492707AG492708
length769751
length of high quality
(start - end)		244 (76 - 319)452 (80 - 531)
definitionCHROMAT_FILE: MSMg01no390_m10.b1 PHD_FILE: MSMg01no390_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:48 2005CHROMAT_FILE: MSMg01no390_m10.g1 PHD_FILE: MSMg01no390_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATAATTTGCGGCGCTAAACGAAAACCACTTCCTCACCCCCGCGGNA
ATCTTCCTTGTGCCACACCACAATTCTTTTCCAGCCCCTAAATCAGGGCA
GCTTACAACCGCCTGTACTGCTAGAGGAGCAACTGCTTCTGGACTCCGTG
GGTATCTATAATTCCCCTCCACCCCCCCCTCTCTCACACACACACACACA
CACACACACACACACTTAAATCCTAAAAAAAAAAAAAGGTGGAGAGCAAT
TGTTTTGATACACTATATCAACATCTGGTGTCCACACACATGCACCCACA
CATACAAATGTATGCATTATTCCTCCTCCCCACAAAAGNAAAAAGCAGAA
AATAAAAATGGTTTTTCAATGGCTGGGGGACACAGCGTGGTGCCGGGCGT
GTTTGGCTAGTTAGCACCCCCCGCGCTCTGAGCCCAGTTGCCAGCGATGG
GAAGAAAAACACGGCAGGAGACCAAGCACATGGGAGCGGCAGTAAGAGAA
CGCCTTTCCCGGCTTTGCGGACAGCCATCCCCCCCCCCACCTGCACTGAC
ACCCCGCCTACACTCCTGACCGCGCGACTGGTTCCGCGAAGACCTCCACC
AAAACCATTTATCCCCACCCACCTTACTCACTCCATCACCCCACTCACTT
ACCCCATTCCACTCACCTTTTTTTTTTTTCTCCCCTACAACAACACCCGC
CCACACGCCCCCTCCCCCTTCACCCCTCCCCTCATCTCATTCTCCTTCTT
CCTTCCCCATCATCTCTCT

NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGGCTGGCATAGACTTC
TGGGAGAATCTGATGCCACACATTCAGCTCTAGCCTCAGAGTTCCTTGTT
GGGCCCTGTGGACACCTGTCCTTGAGGGCTGGCTGCTGACTCTGCACAAC
CTTCCAGAAAAGTGCTGAGCCCAGCAGTTCCTGCACGGCAGAGGGAGTTC
AGCTCACAGGACTGTTTTCCACCAACTTTCCGAATCCCTGGCTTCAGTCC
CAAAGCAGCATGTCAGGGTTTATGTTTTTTTGCAGAGAGCCAGTGACTTT
CTAGAAAGCTCATAGCCATTCATTAACTCAGGCTTCCCCCTTGAAGTGTC
AGAGGAAAGATAGGAAGCCCTACCACAGCATGGGTCATGGCATACCAGGG
TTCCTACAGTGGGTGGTCGGAGGGTCAGCTTCAAGGGAGCCTTCTGGGCT
CTGGCACTTAACTGAGCTGCGTGGCAGGAACTCCACAGGCCTGAGGGACA
GGAATGTGCCTCTCGCTACCCCAATATTGTGAGGAACGTGTGCTCCCTCC
GTTCCTCAGGAAGGCTTAGGCCTCCATTCCAAGCTGTGCCTGGCCCCACT
TATACTCCCTTTTTTTTTTTTGTTAAATCTTTTATATGGCGCACTCTTTT
TTTCCCCATAGTTCCCTTGGTCTGTCACTCTCCCTTACCTAACTCCCTCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_m10.g1 MSMg01no390_m10.g1 CHROMAT_FILE:
MSMg01no390_m10.g1 PHD_FILE: MSMg01no390_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:48 2005
         (452 letters)



>mm_chr2_33021368_33022219
          Length = 852

 Score =  797 bits (412), Expect = 0.0
 Identities = 442/452 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaggctggcatagacttctgggagaatctgatgccacacattcagctctagcctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctagaggctggcatagacttctgggagaatctgatgccacacattcagctctagcctcag 427

                                                                       
Query: 61  agttccttgttgggccctgtggacacctgtccttgagggctggctgctgactctgcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agttccttgttgggccctgtggacacctgtccttgagggctggctgctgactctgcacaa 367

                                                                       
Query: 121 ccttccagaaaagtgctgagcccagcagttcctgcacggcagagggagttcagctcacag 180
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct: 366 ccttccagaaaagtgctgagcccagcaattcctgcacagcagagggagttcggctcacag 307

                                                                       
Query: 181 gactgttttccaccaactttccgaatccctggcttcagtcccaaagcagcatgtcagggt 240
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 306 gagtgttttccaccaactttccgaatccctggcttcaggcccaaagcagcatgtcagggt 247

                                                                       
Query: 241 ttatgtttttttgcagagagccagtgactttctagaaagctcatagccattcattaactc 300
           |||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttatgttgatcagcagagagccagtgactttctagaaagctcatagccattcattaactc 187

                                                                       
Query: 301 aggcttcccccttgaagtgtcagaggaaagataggaagccctaccacagcatgggtcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aggcttcccccttgaagtgtcagaggaaagataggaagccctaccacagcatgggtcatg 127

                                                                       
Query: 361 gcataccagggttcctacagtgggtggtcggagggtcagcttcaagggagccttctgggc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 126 gcataccagggttcctacagtgggtggtcggagggtcagcttcaagggagccttctaggc 67

                                           
Query: 421 tctggcacttaactgagctgcgtggcaggaac 452
           ||||||||||||||||||||||||||||||||
Sbjct: 66  tctggcacttaactgagctgcgtggcaggaac 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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