BAC Information

Click to search

BAC

Clone NameMSMg01-391G06
Chromosome2 (Build37)
Map Location 132,571,841 - 132,572,162
singlet/doubletsinglet
Overlap genenone
Upstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906
Downstream geneChgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391G06.T7 (MSMg01no391_g06.b1)MSMg01-391G06.TJ (MSMg01no391_g06.g1)
ACCAG493174AG493175
length763822
length of high quality
(start - end)
322 (71 - 392)34 (132 - 165)
definitionCHROMAT_FILE: MSMg01no391_g06.b1 PHD_FILE: MSMg01no391_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:35 2005CHROMAT_FILE: MSMg01no391_g06.g1 PHD_FILE: MSMg01no391_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCTAAACGATNACTAAATTCCCACAAATCCGCGGAATTCTA
CAGTTTTCCCACACACAATTAATATTATTCAGATGAATCATAAAACATAA
ATAAGCCTGAGCCACCTTCATGCCTAGCAACCCTGCCACCCACAGTCTAT
GTTTTATGTTTTGCAACAGTGTGGATATTGAATCCCAATTAACAAGGAGG
ATGGCTGCCTCTGGGTCAGGAGCTTGTGAAGCTGGGCAGTCTCTGTGGGT
ACTTGTTTACATCTAAAACCAAAGCTGGATGAATCGTGCAGAGGCAAGTG
GCATCTGCTGCTTCTTTTTATCTTAAAGAGGAGCAGATGCACTGCTCGAA
GGACATAGCCCTGTGACAGGCCACTGCTGACGAGGAAAGTAAGAGCCAGA
AAAAGCCCCCCCCCCCCCCCGCGGAGACCAAGCCCACATGAAGGGCAAGG
CAACCGAATCCCCCCCGTGTCCTGACATGTAAATTATCTTACAAAATTAT
ATATTACTCCTAAGAAATTACCATGCTCCAGAGTTGGACAGCTGCCCCAC
CGTCTGTAACCACCTGCTATACCCCCCCGACGACCTGGTTTTCATCCCCC
ATATCCCTTGTTGGAATCCCCACACCCCGCTTCCGGAAATCCCTCCCCCG
TACTTCCCCATGCGCCGTACCTCCGCCATCCCCTTGCTTCCATCCCCCTT
GTGCTCTTTTCCGCCCCCCCCGTCTTTCATTGTCCCCCCCCCCCCCTCCC
TGCCCCCTCATTT
NCTACGATGTAGTGGGAGGCCCGGCGGNCGCCCGGTTTCGCACTTCCGGN
NGAACNANAGAAGGTTACAACTCACTTCTGGAAGGAAGCTGCTTATAGTC
GTTTTTCTAAGGAAGAAATTGGACAGCTGAGATATATGCTTTCTCCTGCC
ATCTTCATGGCCTTCTTGGCCTGGTTCAGGACTCAGTGGGAAATTCAAAG
GGTACATTGTGACCTCTCAAGGAACACTGGCACCATTGACTGTTGCTAAC
AGTTTTTTTTGCTGAGGCTCAACCCTAGGCCTCAGCAAATGCTCTCCCAC
CGAGCTATACACCCTCAGCCTTTTTTTGTTTAAGCCCCGTCCCTTCCCTT
CCCTTCCCTTCCTTTTTTTCTTCCCCCTTATACCGTTTGGGCGCCCTTTT
TCCCCCATCTTTCTTCCTTTCCCCCCCTCCATTTTCTCCTCCCCTTCTTC
CCTCCCCTTTTCTTATTCCCCCTCTCCTTTTCATCCCCTCCCTATCCCCC
CCCCCTCCACTTCACCCTTTCCCAACCCCCCCCTTCTTTTCCCTCTCTCT
CCCCTTTCCCCCTCCATCCTTTCCCCCCCCATCCTTCCCCTATTCTTTTT
CTTTCCCCCTCTCCCCCCCTTTCCCCCCCCCCTCCCCCTTCCCCTTTCCC
CCTTCCTCCTTCTTTCTATTCCACAAAACTTATCCCCCTCCCCCCCCCGA
ATATTCCCTTTTCCTTTCCCCCCCCCCCCCCCCTACTTTTCCCCCCCCCC
CTTTTTTCTCCCCCCCCTCTCCTTCTTCTCTCCCTTTTCTTTCCTCCCCC
CCATTCCCCCGTATTCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_g06.b1 MSMg01no391_g06.b1 CHROMAT_FILE:
MSMg01no391_g06.b1 PHD_FILE: MSMg01no391_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:35 2005
         (322 letters)



>mm_chr2_132571641_132572362
          Length = 722

 Score =  516 bits (267), Expect = e-151
 Identities = 308/327 (94%), Gaps = 10/327 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatattattcagatgaatcataaaacataaataagcctgagccaccttcatgcctagcaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aatattattcaaatgaatcataaaacataaataagcctgagccaccttcatgcctagcaa 463

                                                                       
Query: 61  ccctgccacccacagtctatgttttatgttttgcaacagtgtggatattgaatcccaatt 120
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 462 ccccgccacccacagtctatgttttaggttttgcaacagtgtggatattgaatcccaatt 403

                                                                       
Query: 121 aacaaggaggatggctgcctctgggtcaggagcttgtgaagctgggcagtctctgtgggt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 402 aacaaggaggatggctgcctctgggtcaggagcttgtgaggctgggcagtctctgtgggt 343

                                                                       
Query: 181 acttgtttacatctaaaaccaaagctggatgaatcgtgcagaggcaagtggcatctgctg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 342 acttgtttacatctaaaaccaaagctggatgaatcgtgcagagggaagtggcatctgctg 283

                                                                       
Query: 241 c-----ttctttttatcttaaagaggagcagatgcactgctcgaaggacatagccctgtg 295
           |     | |     ||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 282 ccaccctcc-----atcttaaggaggagcagatgcactgctcgaaggacagagccctgtg 228

                                      
Query: 296 acaggccactgctgacgaggaaagtaa 322
           ||||||||||||||| |||||||||||
Sbjct: 227 acaggccactgctgaggaggaaagtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)