BAC Information

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BAC

Clone NameMSMg01-391G08
Chromosome2 (Build37)
Map Location 70,662,319 - 70,662,460
singlet/doubletsinglet
Overlap geneTlk1
Upstream geneKlhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2
Downstream geneMettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391G08.T7 (MSMg01no391_g08.b1)MSMg01-391G08.TJ (MSMg01no391_g08.g1)
ACCAG493178AG493179
length779807
length of high quality
(start - end)
338 (63 - 400)145 (79 - 223)
definitionCHROMAT_FILE: MSMg01no391_g08.b1 PHD_FILE: MSMg01no391_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:36 2005CHROMAT_FILE: MSMg01no391_g08.g1 PHD_FILE: MSMg01no391_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCCGCTAAAACACTACTATATTCCCAACATCCGCGGAATTCCATGAAT
TCCCCTGCACTGACTGCACTGACTGCACTGACCACATTGACTGCACTGAC
TGCAGGGACCACACTGACTGCAGTGACTGCAGTGACCACACTGACTGCAC
TGACTTGCAGTGACCACACTGACTGCACTGACTTGCAGTGACCACACTGA
CTGCACTGACTTCAGTGACCACACTGACCGCACTGACTGCAGGGACCACA
CTGACTGCAGTGACCACATTGACTGCACTGACTGCAGGGACCACACTGAC
TGCACTGTATCTTGCAGTGACCACACTGACTGCACTGACTTCAGTGACCA
CACTGACCGCACTGACTGCAGGGACCACATTGACTGCACTGACTGCAGGC
ACCACACTGACTGCAGTGACTGCAGTGACCACACTGACTGCACTGACTTG
CAGTGACCACACTGACCGCACTGACCTGCGGGACCACCCTGACTGCAGTG
ACTGCACTGATTGCCCCATACTCCCCCCCAATGAATGTAACTGACCAGAA
CCGCCCCTGATTCACCTGAATTCCCCTGCCTCGTACTGAACCTGCTCCTA
CCTCCCCCTAACCTAATCTTCTATGACCCTCCCCCCCCTTGCCTGAATTC
CCCTTAATCTGTTCTCCCTAACCCGTTCCCTCCCCCTCGACATCTTCCAC
GGGCCTCTCTTTAAACCCCCTCCTCCCCCCCCGCTGTTCTCTCTTCCAAA
TTCCCTACTCACCCTTTCCCCTAACTTCG
NTTTCGATGATGTGNGAGGCCCGGCGGNCGCCCGGCTCAGCACTTTAGGN
GAACTATAGAAGTTCCAGCACACTTCGTTAGCAATCGGNAAATGGGCTGT
TCGCTCCCGGTTGTCTCGCACAAGGAGATTATCAGCACCTTTAAAAAAAA
GAAGAAGAAAACGTTTGAAAGTCCAGCAGTCTAGTAAGCCTTGTAAAGAA
ATTCAGAGCTTCGGTTTATGAGTCGTTCGGATTATTGTATTTTGAAAATA
TGTTTATATTTATTATCCATAGCTTTGCTAATTGCCAATCAAATGTTTCT
CGCCCGGATCCAGGGGTTGTTGGCTTATTATTCCTTGCCATTTTGTTCCC
GTGAGCATGTGTTTTTTTGACAATACGCTCAAAGATTGACGCGCATATGC
TCCAGAAAATTCTTGCCAACACCCGCTTTATTTTCCCCCCTATCTCTCGC
GCCATTGTCTATTCGACTTTCTTTTCTTCCTCCTCTCCCGACCCGTCCCT
TCCTCATTCCCCGCACACCATCTTTTTCCTTCTCTCGCCTTCCCCCTCCA
CTTTCCCCCCCTCCCTTCCCCCTCCCTAACTTTTCCCTCCCCCCCTATTT
TCCTTCCCCTCCCCTTTCCCCCTCCCTCTTCTCCCTTTGCTGTTTTATAA
CTACCTACCCTCTCCTTCTTTTTTTTTTCTCTTTATCCATTTCCCCCCCC
CCCCCCCTTTCCCTTCCCCCCCCCCCCCCTTTTCCTCCCCCCCCCTCCCC
TTTCTCCTCCCCTTTTTTCTTCCCCTCCTCCCCTTTCCCCGCCTTATTCC
TCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_g08.g1 MSMg01no391_g08.g1 CHROMAT_FILE:
MSMg01no391_g08.g1 PHD_FILE: MSMg01no391_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:36 2005
         (145 letters)



>mm_chr2_70662119_70662660
          Length = 542

 Score =  259 bits (134), Expect = 5e-74
 Identities = 141/145 (97%), Gaps = 3/145 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcaatcggnaaatgggctgttcgctcccggttgtctcgcacaaggagattatcagcac 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tagcaatcggtaaatgggctgttcgctcccggttgtctcgcacaaggagattatcagcac 283

                                                                       
Query: 61  ctttaaaaaaaagaagaagaaaacgtttgaaagtccagcagtctagtaagccttgtaaag 120
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctttaaaaaa---aagaagaaaacgtttgaaagtccagcagtctagtaagccttgtaaag 226

                                    
Query: 121 aaattcagagcttcggtttatgagt 145
           |||||||||||||||||||||||||
Sbjct: 225 aaattcagagcttcggtttatgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 542
Length adjustment: 8
Effective length of query: 137
Effective length of database: 534
Effective search space:    73158
Effective search space used:    73158
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)