BAC Information

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BAC

Clone NameMSMg01-391M02
Chromosome2 (Build37)
Map Location 8,079,171 - 8,079,748
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648, LOC672230
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391M02.T7 (MSMg01no391_m02.b1)MSMg01-391M02.TJ (MSMg01no391_m02.g1)
ACCAG493453AG493454
length734748
length of high quality
(start - end)
578 (62 - 639)333 (326 - 658)
definitionCHROMAT_FILE: MSMg01no391_m02.b1 PHD_FILE: MSMg01no391_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:04 2005CHROMAT_FILE: MSMg01no391_m02.g1 PHD_FILE: MSMg01no391_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTAAACGACTACTATAGTTCGAGGATCCGCGGAATTCTCTGAATG
ATTCTTGATTGGGAAGATTTGTGTGTCCCATTTGAATGGCTTGCATAAAT
GTTTACATTTAAAGCAAAATATAAATAAAACAAAAAGAAAATAATCCAAA
ATAAAAAATATAAGTCGAGGCTGAGAAGAAGGTGGTCTGTGTATCCCTTG
GAGCTAGCAGGCTACATAGTCTGCAAAGTACAGTAGCAAATAAGAGACAC
TGTTTCAAACTATGTCGATTGTGAATACCAACATCCAAGCTGGTCTTCTT
AACACCATACATATTCTCATGCAGATTCATACCTACACTTGCACATATAA
TAAACACACACACATGCACATGGACACACAAATATACACCAACACATACA
GAGTTTATAAAAGGATTTTAAAAAAGGTAACCATTTATCTTTTAATATCA
ACTAAGCTCTCTACTAAATCACCATTATTCATAGTCAATAGACTAATGGG
CAAATTGGCTGTGCTGGTAGGCATGAACATTATTCATAGAATGCACAGCA
TTAATTCCAACCTCATGTAGTTCTCAGTGCACAATCTGACAACAGTAGAG
ATAAATTCTGCTCTGTAGTGTATATCATGATGTAAGGATGCCAACCAGAT
TTCTTGATATTCATTCATTCATTCATTCATTCATTCATTCATTCCTTCAT
TCATTATCACAGATGAGAGGGTTTTCACCTCATT
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTT
AAGAATTATTTGGTTCCCTGGAGTCTAACTTCTTGAGTTCTTTATTATAT
TGGATATTAGCTGTCTATTGGGTGTAGGATTGGTAAAGATACTTTCCCAA
TGTGTTGGTTGCCATTTTGTCCTATTGACAGTGTCCTTTCCCTTACAGAA
GCTTTGAAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTAGCTCTC
CCTTGGTCATTGATTGGCAGTATTAATATAATAAAAATGGCTGTCTTGCA
GAAAGCAATCTACAGATTCAGTGTAATTCCTGTCAAAATTCCAACTCAGA
TCTTCATAGTTAGAGCAATTTGAAAATACATCTGGAATAACAAAAAACCT
AGGATAGGGAACACTATTCTTAACAATAAAAGAACTTCTGGTGGAATCAT
CATCCCTGACCTCAAGCTGTGCTACAGAGCAATTGTGATTAAAACTGCAT
GGTATTGGTACAGTGACAGACAGGTAGATCAATGGAATAGAATTTAAGAT
CCAGAAATGAACCCACATACCCATGGTCACTTGATCTTTGACAAAGGAGC
TAAAACCATTCAGTGGCAAAAAGGACACATTTTCAAAAAAAAAAAATGGC
GCTGGCTCAACTGGCGTTTAACATGTCAGAGCAATGCCAATTGATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_m02.b1 MSMg01no391_m02.b1 CHROMAT_FILE:
MSMg01no391_m02.b1 PHD_FILE: MSMg01no391_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:04 2005
         (578 letters)



>mm_chr2_8078971_8079948
          Length = 978

 Score = 1065 bits (551), Expect = 0.0
 Identities = 572/579 (98%), Gaps = 2/579 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaagatttgtgtgtcccatttgaatggcttgcataaatgtttacatttaaagcaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaagatttgtgtgtcccatttgaatggcttgcataaatgtttacatttaaagcaaaata 260

                                                                       
Query: 61  taaataaaacaaaaagaaaataatccaaaataaaaaa-tataagtcgaggctgagaagaa 119
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 taaataaaacaaaaagaaaataatccaaaataaaaaaatataagtcgaggctgagaagaa 320

                                                                       
Query: 120 ggtggtctgtgtatcccttggagctagcaggctacatagtctgcaaagtacagtagcaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtggtctgtgtatcccttggagctagcaggctacatagtctgcaaagtacagtagcaaa 380

                                                                       
Query: 180 taagagacactgtttcaaactatgtcgattgtgaataccaacatccaagctggtcttctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagagacactgtttcaaactatgtcgattgtgaataccaacatccaagctggtcttctt 440

                                                                       
Query: 240 aacaccatacatattctcatgcagattcatacctacacttgcacatataataaacacaca 299
           |||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aacaccatacgtatcc-catgcagattcatacctacacttgcacatatgataaacacaca 499

                                                                       
Query: 300 cacatgcacatggacacacaaatatacaccaacacatacagagtttataaaaggatttta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 500 cacatgcacatggacacacaaatatacaccaacacatacagagtttataaaaggattttt 559

                                                                       
Query: 360 aaaaaggtaaccatttatcttttaatatcaactaagctctctactaaatcaccattattc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaaaaggtaaccatttatcttttaatatcaactaagctctctactaaatcaccattattc 619

                                                                       
Query: 420 atagtcaatagactaatgggcaaattggctgtgctggtaggcatgaacattattcataga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atagtcaatagactaatgggcaaattggctgtgctggtaggcatgaacattattcataga 679

                                                                       
Query: 480 atgcacagcattaattccaacctcatgtagttctcagtgcacaatctgacaacagtagag 539
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgcacaacattaattccaacctcatgtagttctcagtgcacaatctgacaacagtagag 739

                                                  
Query: 540 ataaattctgctctgtagtgtatatcatgatgtaaggat 578
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ataaattctgctctgtagtgtatatcatgatgtaaggat 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)