Query= MSMg01no391_o23.b1 MSMg01no391_o23.b1 CHROMAT_FILE:
MSMg01no391_o23.b1 PHD_FILE: MSMg01no391_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:18 2005
(347 letters)
>mm_chr2_125678948_125679694
Length = 747
Score = 663 bits (343), Expect = 0.0
Identities = 346/347 (99%)
Strand = Plus / Minus
Query: 1 acggaggcaggattgcatgctcacacccaacttaggcaacttaataagaccctttctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 acggaggcaggattgcatgctcacacccaacttaggcaacttaataagaccctttctcaa 552
Query: 61 aaaataaatagctggatgaaattactggtagtggaacatttgtctaaaatgcataaggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaaataaatagctggatgaaattactggtagtggaacatttgtctaaaatgcataaggcc 492
Query: 121 tgagttcattctcctccagcatggccaagataaaattatgatttgtattaaagcagcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgagttcattctcctccagcatggccaagataaaattatgatttgtattaaagcagcaac 432
Query: 181 ttaaaattatatggcatatttggtgggaaagagaatagatttagatataggtcatcacag 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttaaaattatatggcatatttggggggaaagagaatagatttagatataggtcatcacag 372
Query: 241 actgctttcgagacatttgagttatttcatcaggaagttggagccatgactgaaccttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 actgctttcgagacatttgagttatttcatcaggaagttggagccatgactgaaccttaa 312
Query: 301 gatttgtaaagcctttttataatatcaagtgactttattttacatgt 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gatttgtaaagcctttttataatatcaagtgactttattttacatgt 265
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_o23.g1 MSMg01no391_o23.g1 CHROMAT_FILE:
MSMg01no391_o23.g1 PHD_FILE: MSMg01no391_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:18 2005
(247 letters)
>mm_chr2_125530255_125530902
Length = 648
Score = 464 bits (240), Expect = e-135
Identities = 246/248 (99%), Gaps = 1/248 (0%)
Strand = Plus / Plus
Query: 1 tcgctga-aaaaattttcatgccgtcttaggagagtccctgggccttgtgtcttttattc 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgctgacaaaaattttcatgccgtcttaggagagtccctgggccttgtgtcttttattc 260
Query: 60 aatggttctgattttgtgattacaattcaaaagttgcaactaataccctaaagcaagtct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggttctgattttgtgattacaattcaaaagttgcaactaataccctaaagcaagtct 320
Query: 120 ttgtggcactgtgcccaaggccagctagtatgagatttttatcagtgtgtaaaggcctaa 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 ttgtggcactgtgcccaaggccagctagtatgagatttttatcagtgtggaaaggcctaa 380
Query: 180 tccaaggaggccacaggtgctgtctctgctcttctgggactgaatgctcctaatgcaaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaaggaggccacaggtgctgtctctgctcttctgggactgaatgctcctaatgcaaat 440
Query: 240 gtgaattg 247
||||||||
Sbjct: 441 gtgaattg 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space: 152082
Effective search space used: 152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
