BAC Information

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BAC

Clone NameMSMg01-392A12
Chromosome2 (Build37)
Map Location 150,446,299 - 150,446,545
singlet/doubletsinglet
Overlap geneAcss1
Upstream geneEG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120, EG245174, 3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik
Downstream geneVsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A12.T7 (MSMg01no392_a12.b1)MSMg01-392A12.TJ (MSMg01no392_a12.g1)
ACCAG493663AG493664
length770752
length of high quality
(start - end)
244 (80 - 323)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no392_a12.b1 PHD_FILE: MSMg01no392_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:26 2005CHROMAT_FILE: MSMg01no392_a12.g1 PHD_FILE: MSMg01no392_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCACACACCA
TCCGCGGAATTCTCCATTCTCCATCTAAAGACTACAGATGACTAAAGGTA
ACAGACTTGGAAAGCACAGGTCAGGGGGCTGGAGAGATGACTCAGTGGTT
GAGAGCACTGACTGTTCTTCCAGAGGTCCTGAGCTCAATTCCCAGCAACC
ACATGGTGGCTCACAACCATCTGTAATGAGATAGGATGCCCTCTTCTGGA
ATGTCTGAAGGCAGCTACAGTGACTCATATACATACAATAAATAAATCTT
TAACAAAAGAAAAGAAAAAAAGCTCTGGTACAGTGCACAATGAGGTGTGC
TATCTACAGGCCTGTGTATCCCCAATTATCTACTGCTGAGTTTTTCCTAA
GAGGGTCTATAAAAAGTTGACCACCCACGAGTATGATCTCTTTTCAACGT
TCTATTTTGCTTTTCCTAAAAACTGTGTGTGTGTGTGTGTGTGTGTGTGC
GTGTGCCGTCTTCCCCCCCCCCTTACCTCCCTCTCCCCCTATTCCTCCCC
CCTCCCCCTTATTCCTCCCCTTTCCCGCTTCCCCCCCCCTTCCCCTTCTT
CCCCCCCCCACGTTTTTCTTTCTCCCCCTCCTTTCCCCTCCCCCCCCCCC
CCTCCCTTCTTTTTTTTTCCCCCCCCCTGCTCCCACTCCTCCGCGATCAC
CCCGCTTTACCTCGATTTCCCCCCCCTCTTCCCCTTCCCTGCTTCTTCTC
CCCCCCCCCCCCCCCCTCTC
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAACCCAGAAATCATTGTGGAGAGGT
ATCAGCAAAGAAAGAAAGAAAAAAAAAATCTGAAGAGACTCAAGGGTGGC
CCAGGCCTTCCCACAGGAAATGACTCCTTTACAGGAAATAGGAAACATGT
TCAGAAACCACATAAGACTGGAGAACTCCATGTCTCTCAAATCTTTAAAA
TCTGTAGTTTGACTGAGACATAGCTGAGTGGTGGAGTTCAAGTTCAGCAT
TCAGAAGTCTCTGGGCTCAACTCTGTTACGATTGGAATCTTAGATGTTCT
CCAAAGACTATGTTAAAGGTCAACAGTCTGTGGTGCTGTTGGGGCATTGT
GAAACTTTTAGGAGGCGCCAGTCTGGTGAGAGAAAGAAAGGTCATTCTAG
GGGTGGCCCTTTGAGGATATATTCAATCCCTTTCTCCACTACCCTGATTT
TAGCAGCTCTTGTTGGCCCATGGCTTCCCCCCAAAAAAAAAAGGCGGTGG
CTTCCGAACAAAAATCACGTCCCCCCCTTCCACCCTTAACCTGGCACCCC
CGACCCCTAATAAAACCTTTCCTTTCTTTTTACTTACCCGCCCTCTTCGC
CCTTTCTCCCCCCCTTCTTTTTTTTTTACCTCCCTCCTCCCCCTCTCCCT
CAGTCCCATCCTTACTCCAATCTTCTTTTCTCTCCTTTCCATCTTCCCCC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a12.g1 MSMg01no392_a12.g1 CHROMAT_FILE:
MSMg01no392_a12.g1 PHD_FILE: MSMg01no392_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:26 2005
         (246 letters)



>mm_chr2_150446099_150446745
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%), Gaps = 1/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacccagaaatcattgtggagaggtatcagcaaagaaagaaagaaaaaaaaaa-tctga 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 caacccagaaatcattgtggagaggtatcagcaaagaaagaaagaaaaaaaaaaatctga 260

                                                                       
Query: 60  agagactcaagggtggcccaggccttcccacaggaaatgactcctttacaggaaatagga 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagactcaagggtggcccaggccttcccacaggaaatgactcctttacaggaaatagga 320

                                                                       
Query: 120 aacatgttcagaaaccacataagactggagaactccatgtctctcaaatctttaaaatct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatgttcagaaaccacataagactggagaactccatgtctctcaaatctttaaaatct 380

                                                                       
Query: 180 gtagtttgactgagacatagctgagtggtggagttcaagttcagcattcagaagtctctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagtttgactgagacatagctgagtggtggagttcaagttcagcattcagaagtctctg 440

                  
Query: 240 ggctcaa 246
           |||||||
Sbjct: 441 ggctcaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)