BAC Information

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BAC

Clone NameMSMg01-392C17
Chromosome2 (Build37)
Map Location 45,163,076 - 45,163,413
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392C17.T7 (MSMg01no392_c17.b1)MSMg01-392C17.TJ (MSMg01no392_c17.g1)
ACCAG493767AG493768
length878811
length of high quality
(start - end)
64 (78 - 141)340 (79 - 418)
definitionCHROMAT_FILE: MSMg01no392_c17.b1 PHD_FILE: MSMg01no392_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:37 2005CHROMAT_FILE: MSMg01no392_c17.g1 PHD_FILE: MSMg01no392_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGATCAAAAATTGCGGCCGCTAAACGAATCACAATCCGAACACGATCCG
CGGAATTCCCATTTCTTCGCGCAATTGTGAATCTTACTAATTTGAACGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAACTAATCTT
GGCTGCCCCACCTTTCTACATCCGGAATTAACCCCAATCCACCTACCTCA
CTGAACACCCCCTCTTATATTCCTTCACCCCCCCTGTATACCACTCCCCT
TTTTCTCTCCCCCTCAGCCCAATATCTCATCCGCCCCCCTCCCTTCTATC
ACCCCCCCCCAACACCCCCCCTTTTCTTTTCTCCCCCCCACCCCCCCACC
CCCCACGCCAACCTTCCTTTCCCCTCTTCTTCCCCCTCCCCCCCTCCTCT
TATCCACTTCTACCCTCCCCTCCCCCCCCCCCCCCCTATCCTCCCTCACC
CCCCCCCCCCCTTTCCCCTCCCTCCCCCCCCTCCCCCCCCCTCCCACAAT
CCCCCCCCTCCTACACCCCTACATCCCCCCCCCTCCACTTCCCCCCTCAC
CCCCCCGCCCCCCCATCTTCATCACCCACCCCTCCCCCCCCCCCCTTTAT
CCCACCTTCCCCCCCCCCCCCCCTCTCTCCCTACCCATTCCCCCTACCCT
CTCCAACCCCCCCCCCCCACCCTCCTCCTTCCCCCCGCTCCCTTCACTCT
CCATCCCTCCCTCTTTTTATTCCCCTCCTCTCACTCACCCCCCTACCCTC
CCTTCCCCCCCCCTTCTCTCTCCCCTTCTCAACCCCCTATCATCCCCCCC
TCTTCCCTCTATCTCTCCCTCCCCCTCCCCATCCCCTCCCCCCCTCTATT
ATCCCTCATACCTCCTCCTCCCTCCCTN
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCATCCGGGCATGGCAAAGC
CAAAGCTGTCAGAGTCTCAGGGCATCTGTGGCTGTCTGCAATAGGCCTGT
GTAAAAGTGAGCCTATCGGTGTTAATCACAAATCGTGGATTGGGAATGAA
TTTACAGGCCTTATCTTTCTGTGCCAGACTATTGGTTACTGATGGTTCTG
GGGAAGGACTCATCGCTGACTTCAGCTGTGTAACCACTGAGGAGCTACCA
GTTCCAAACCCATGGTCATACAGATGTATCCTGGCTGAACTCGGTGGGTC
TCCAAAGCAGGTCATGCTTACCGGAAGAGGACTTGCATGGAAGGAAGGAA
TTAGGGGTAAGAGGAGATTAACTCGCTTTCCCTTCTTTCCCCTCCATCTC
CTCCTTTACCTCTCTTTTCCCTTTTCTTCTCTTTCCCTCCCTTCCCTTAT
TTCTCCTCACCATTTTCCTCCTTCCCTCTCATTTCTTTTCCCTTTCTTCC
CTTCCTTATTCCTCTCCCCCCCTTCTCTTTCTTCCTCCCTCATCCATCCT
TCCCCCTCACCTCCCCTTTCTTCTATTCTCCTTCTCTTCTCCCTCTTTTT
CGTCCCCTCTTTTCATCTATNCCTCCCATCTACATCTTATATCCTTCCTT
ATTCCCTCACCACCCACTCATTCTCTTCATCTTCCCCCTCTTTCTATCCT
TCTCCCTTCTTCTTTGCCTTTCCCCTCCTCTTTCCTTTACTTTTCTTATT
TTTCTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_c17.g1 MSMg01no392_c17.g1 CHROMAT_FILE:
MSMg01no392_c17.g1 PHD_FILE: MSMg01no392_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:37 2005
         (340 letters)



>mm_chr2_45162876_45163613
          Length = 738

 Score =  565 bits (292), Expect = e-165
 Identities = 328/340 (96%), Gaps = 2/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcatccgggcatggcaaagccaaagctgtcagagtctcagggcatctgtggctgtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctcatccgggcatggcaaagccaaagctgtcagagtctcagggcatctgtggctgtctg 479

                                                                       
Query: 61  caataggcctgtgtaaaagtgagcctatcggtgttaatcacaaatcgtggattgggaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caataggcctgtgtaaaagtgagcctatcggtgttaatcacaaatcgtggattgggaatg 419

                                                                       
Query: 121 aatttacaggccttatctttctgtgccagactattggttactgatggttctggggaagga 180
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 418 aatttacaggccttatctttctgtgccaggctattggttactggtggttctggggaagga 359

                                                                       
Query: 181 ctcatcgctgacttcagctgtgtaaccactgaggagctaccagttccaaacccatggtca 240
           ||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||
Sbjct: 358 ctcatcgctgacttcagttgtgtaaccactgaggagctactagtactaaacccatggtca 299

                                                                       
Query: 241 tacagatgtatcctggctgaactcggtgggtctccaaagcaggtcatgcttaccggaaga 300
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 298 tacagatg-atcctggctgaactcgg-gggtctccaaagcaggtcatgcttacaggaaga 241

                                                   
Query: 301 ggacttgcatggaaggaaggaattaggggtaagaggagat 340
           ||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 240 ggatttgtatggagggaaggaattaggggtaagaggagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 738
Length adjustment: 9
Effective length of query: 331
Effective length of database: 729
Effective search space:   241299
Effective search space used:   241299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)