MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-392C23
Chromosome	2 (Build37)
Map Location	103,609,852 - 103,610,294
singlet/doublet	singlet
Overlap gene	Caprin1
Upstream gene	Slc1a2, Cd44, Pdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10
Downstream gene	LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Slc1a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20511 MGI:101931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Cd44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12505 MGI:88338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Pdhx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27402 MGI:1351627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56369 MGI:1926788
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ehf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13661 MGI:1270840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elf5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13711 MGI:1335079
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12359 MGI:88271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abtb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99382 MGI:2139365
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nat10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98956 MGI:2138939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Caprin1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53872 MGI:1858234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC433458 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 51 ESTs, 8 Proteins

name	LOC100042961 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042961
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100042965 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042965
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Lmo2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16909 MGI:102811
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxo3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57443 MGI:1929084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cd59b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:333883 MGI:1888996
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd59a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12509 MGI:109177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A930018P22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68243 MGI:1915493
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D430041D05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241589 MGI:2181743
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043349 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043349
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 122 mRNAs, 3432 ESTs, 23 Proteins

name	Hipk3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15259 MGI:1314882
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC383735 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC668733 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668733
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 26 ESTs, 1 Protein pseudo : _no_value

name	Cstf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228410 MGI:1351825
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Tcp11l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320554 MGI:2444263
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622282 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622282 MGI:3646938
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	OTTMUSG00000014964 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241593 MGI:3649546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Depdc7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211896 MGI:2139258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Qser1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99003 MGI:2138986
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 121 ESTs, 2 Proteins

name	Slc1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347512 GeneID:20511 MGI:101931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (glial high affinity glutamate transporter), member 2 transcript_id : NM_001077514.2

name	Slc1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892173 GeneID:20511 MGI:101931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (glial high affinity glutamate transporter), member 2 transcript_id : NM_011393.2

name	Slc1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606274 GeneID:20511 MGI:101931
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (glial high affinity glutamate transporter), member 2 transcript_id : NM_001077515.1

name	Cd44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85540467 GeneID:12505 MGI:88338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD44 antigen transcript_id : NM_001039151.1

name	Cd44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85540465 GeneID:12505 MGI:88338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD44 antigen transcript_id : NM_001039150.1

name	Cd44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85540470 GeneID:12505 MGI:88338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD44 antigen transcript_id : NM_009851.2

name	Pdhx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802665 GeneID:27402 MGI:1351627
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pyruvate dehydrogenase complex, component X transcript_id : NM_175094.3

name	Apip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803057 GeneID:56369 MGI:1926788
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : APAF1 interacting protein transcript_id : NM_019735.3

name	Ehf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76096376 GeneID:13661 MGI:1270840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ets homologous factor transcript_id : NM_007914.3

name	Elf5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802240 GeneID:13711 MGI:1335079
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : E74-like factor 5 transcript_id : NM_010125.2

name	Cat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753271 GeneID:12359 MGI:88271
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : catalase transcript_id : NM_009804.1

name	Abtb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:49402266 GeneID:99382 MGI:2139365
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and BTB (POZ) domain containing 2 transcript_id : NM_178890.3

name	Nat10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130147 GeneID:98956 MGI:2138939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-acetyltransferase 10 transcript_id : NM_153126.2

name	Caprin1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42558247 GeneID:53872 MGI:1858234
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell cycle associated protein 1 transcript_id : NM_016739.2

name	LOC433458 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249978 GeneID:433458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 ESTs, 2 Proteins product : similar to trafficking protein particle complex 6B, transcript variant 1 transcript_id : XM_485041.5

name	Lmo2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254347 GeneID:16909 MGI:102811
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM domain only 2 transcript_id : NM_008505.3

name	Fbxo3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46877054 GeneID:57443 MGI:1929084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 3 transcript_id : NM_212433.1

name	Fbxo3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46877053 GeneID:57443 MGI:1929084
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 3 transcript_id : NM_020593.2

name	Cd59b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32469506 GeneID:333883 MGI:1888996
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD59b antigen transcript_id : NM_181858.1

name	Cd59a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371898 GeneID:12509 MGI:109177
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD59a antigen transcript_id : NM_007652.3

name	A930018P22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386934 GeneID:68243 MGI:1915493
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A930018P22 gene transcript_id : NM_026634.2

name	D430041D05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124358960 GeneID:241589 MGI:2181743
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D430041D05 gene transcript_id : NM_001033347.2

name	LOC100043349 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249982 GeneID:100043349
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 122 mRNAs, 3432 ESTs, 23 Proteins product : similar to glyceraldehyde-3-phosphate dehydrogenase transcript_id : XM_001479851.1

name	Hipk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754199 GeneID:15259 MGI:1314882
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : homeodomain interacting protein kinase 3 transcript_id : NM_010434.1

name	Cstf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892648 GeneID:228410 MGI:1351825
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cleavage stimulation factor, 3' pre-RNA, subunit 3 transcript_id : NM_145529.2

name	Cstf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371724 GeneID:228410 MGI:1351825
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cleavage stimulation factor, 3' pre-RNA, subunit 3 transcript_id : NM_177253.2

name	Cstf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:82617561 GeneID:228410 MGI:1351825
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cleavage stimulation factor, 3' pre-RNA, subunit 3 transcript_id : NM_001037326.1

name	Tcp11l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366983 GeneID:320554 MGI:2444263
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : t-complex 11 like 1 transcript_id : NM_177190.3

name	EG622282 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94367123 GeneID:622282 MGI:3646938
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, EG622282 transcript_id : XM_886707.2

name	OTTMUSG00000014964 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343868 GeneID:241593 MGI:3649546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000014964 transcript_id : NM_001033768.2

name	Depdc7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450164 GeneID:211896 MGI:2139258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEP domain containing 7 transcript_id : NM_144804.1

name	Qser1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149249911 GeneID:99003 MGI:2138986
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 121 ESTs, 2 Proteins product : glutamine and serine rich 1 transcript_id : XM_001479246.1

name	Slc1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606277 GeneID:20511 MGI:101931
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; glial high affinity glutamate transporter; solute carrier family 1, member 2 product : excitatory amino acid transporter 2 isoform 1 protein_id : NP_001070982.1

name	Slc1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606275 GeneID:20511 MGI:101931
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; glial high affinity glutamate transporter; solute carrier family 1, member 2 product : excitatory amino acid transporter 2 isoform 2 protein_id : NP_001070983.1

name	Slc1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106409 CCDS:CCDS16469.1 GeneID:20511 MGI:101931
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; glial high affinity glutamate transporter; solute carrier family 1, member 2 product : excitatory amino acid transporter 2 isoform 3 protein_id : NP_035523.1

name	Cd44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85540468 CCDS:CCDS16471.1 GeneID:12505 MGI:88338
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IMP]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0001658 - ureteric bud branching [Evidence IMP] codon_start : 1 note : isoform c is encoded by transcript variant 3 product : CD44 antigen isoform c protein_id : NP_001034240.1

name	Cd44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85540466 CCDS:CCDS16470.1 GeneID:12505 MGI:88338
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IMP]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0001658 - ureteric bud branching [Evidence IMP] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : CD44 antigen isoform b protein_id : NP_001034239.1

name	Cd44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85540471 CCDS:CCDS16472.1 GeneID:12505 MGI:88338
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IMP]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0001658 - ureteric bud branching [Evidence IMP] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : CD44 antigen isoform a protein_id : NP_033981.2

name	Pdhx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28201978 CCDS:CCDS16473.1 GeneID:27402 MGI:1351627
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0031405 - lipoic acid binding [Evidence IEA] codon_start : 1 note : dihydrolipoamide dehydrogenase-binding protein of pyruvate dehydrogenase complex (E3-binding protein) (proX) product : pyruvate dehydrogenase complex, component X protein_id : NP_780303.1

name	Apip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981004 CCDS:CCDS16474.1 GeneID:56369 MGI:1926788
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP] codon_start : 1 exception : mismatches in translation note : monocyte macrophage 19 product : APAF1 interacting protein protein_id : NP_062709.2

name	Ehf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681287 CCDS:CCDS16475.1 GeneID:13661 MGI:1270840
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] GO_process : GO:0030855 - epithelial cell differentiation [Evidence ISS]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : ets homologous factor protein_id : NP_031940.1

name	Elf5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753744 CCDS:CCDS16477.1 GeneID:13711 MGI:1335079
definition	GO_function : GO:0043565 - sequence-specific DNA binding [Evidence IEA] GO_process : GO:0007398 - ectoderm development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : E74-like factor 5 protein_id : NP_034255.1

name	Cat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753272 CCDS:CCDS16478.1 GeneID:12359 MGI:88271
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA]; GO:0005778 - peroxisomal membrane [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0004096 - catalase activity [Evidence IDA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IDA]; GO:0004601 - peroxidase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0042744 - hydrogen peroxide catabolism [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA] codon_start : 1 exception : mismatches in translation note : catalase 1 product : catalase protein_id : NP_033934.1

name	Abtb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49402267 CCDS:CCDS16479.1 GeneID:99382 MGI:2139365
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : ankyrin repeat and BTB (POZ) domain containing 2 protein_id : NP_849221.2

name	Nat10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346561 CCDS:CCDS16480.1 GeneID:98956 MGI:2138939
definition	GO_function : GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : novel putative ATPase domain containing protein product : N-acetyltransferase 10 protein_id : NP_694766.1

name	Caprin1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42558248 CCDS:CCDS16481.1 GeneID:53872 MGI:1858234
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA] codon_start : 1 note : cytoplasmic activation/proliferation-associated protein 1; caprin 1; GPI-anchored membrane protein 1 product : cell cycle associated protein 1 protein_id : NP_058019.2

name	LOC433458 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249979 GeneID:433458
definition	codon_start : 1 product : similar to trafficking protein particle complex 6B isoform 1 protein_id : XP_485041.2

name	Lmo2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678702 CCDS:CCDS16482.1 GeneID:16909 MGI:102811
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : LIM only 2 product : LIM domain only 2 protein_id : NP_032531.1

name	Fbxo3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46877055 CCDS:CCDS16484.1 GeneID:57443 MGI:1929084
definition	GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; F-box protein FBA; F-box only protein 3 product : F-box only protein 3 isoform 1 protein_id : NP_997598.1

name	Fbxo3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10181216 CCDS:CCDS16485.1 GeneID:57443 MGI:1929084
definition	GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; F-box protein FBA; F-box only protein 3 product : F-box only protein 3 isoform 2 protein_id : NP_065618.1

name	Cd59b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32469507 CCDS:CCDS16486.1 GeneID:333883 MGI:1888996
definition	GO_component : GO:0009986 - cell surface [Evidence IDA] GO_process : GO:0001971 - negative regulation of activation of membrane attack complex [Evidence IDA]; GO:0045916 - negative regulation of complement activation [Evidence IDA]; GO:0045918 - negative regulation of cytolysis [Evidence IDA] codon_start : 1 product : CD59b antigen protein_id : NP_862906.1

name	Cd59a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671714 CCDS:CCDS16487.1 GeneID:12509 MGI:109177
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA] codon_start : 1 note : CD59 antigen product : CD59a antigen protein_id : NP_031678.1

name	A930018P22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386126 CCDS:CCDS16488.1 GeneID:68243 MGI:1915493
definition	codon_start : 1 product : hypothetical protein LOC68243 protein_id : NP_080910.1

name	D430041D05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124358961 GeneID:241589 MGI:2181743
definition	codon_start : 1 product : hypothetical protein LOC241589 protein_id : NP_001028519.2

name	LOC100043349 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249983 GeneID:100043349
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479901.1

name	Hipk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754200 CCDS:CCDS16489.1 GeneID:15259 MGI:1314882
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005634 - nucleus [Evidence TAS] [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0019901 - protein kinase binding [Evidence IPI]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA] [Evidence IDA]; GO:0003714 - transcription corepressor activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0043508 - negative regulation of JNK activity [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0018105 - peptidyl-serine phosphorylation [Evidence IDA]; GO:0018107 - peptidyl-threonine phosphorylation [Evidence IDA]; GO:0043388 - positive regulation of DNA binding [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation function : phosphorylates homeodomain transcription factors note : HCMV-interacting protein product : homeodomain interacting protein kinase 3 protein_id : NP_034564.1

name	Cstf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704042 CCDS:CCDS16490.1 GeneID:228410 MGI:1351825
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : cleavage stimulation factor subunit 3 isoform 1 protein_id : NP_663504.1

name	Cstf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82617610 GeneID:228410 MGI:1351825
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : cleavage stimulation factor subunit 3 isoform 2 protein_id : NP_796227.1

name	Cstf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82617562 GeneID:228410 MGI:1351825
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : cleavage stimulation factor subunit 3 isoform 3 protein_id : NP_001032403.1

name	Tcp11l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893201 CCDS:CCDS16491.1 GeneID:320554 MGI:2444263
definition	codon_start : 1 product : t-complex 11 like 1 protein_id : NP_796164.1

name	EG622282 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82886612 GeneID:622282 MGI:3646938
definition	codon_start : 1 product : hypothetical protein protein_id : XP_891800.1

name	OTTMUSG00000014964 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702071 GeneID:241593 MGI:3649546
definition	codon_start : 1 product : hypothetical protein LOC241593 protein_id : NP_001028940.1

name	Depdc7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450165 CCDS:CCDS16492.1 GeneID:211896 MGI:2139258
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 product : DEP domain containing 7 protein_id : NP_659053.1

name	Qser1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149249912 GeneID:99003 MGI:2138986
definition	codon_start : 1 product : glutamine and serine rich 1 protein_id : XP_001479296.1

name	LOC100042961 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042961
definition	number : 2 pseudo : _no_value

name	LOC100042961 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042961
definition	number : 1 pseudo : _no_value

name	LOC100042965 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042965
definition	number : 3 pseudo : _no_value

name	LOC100042965 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042965
definition	number : 2 pseudo : _no_value

name	LOC100042965 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042965
definition	number : 1 pseudo : _no_value

name	LOC383735 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:383735
definition	number : 1 pseudo : _no_value

name	LOC668733 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249908 GeneID:668733
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 26 ESTs, 1 Protein product : similar to 2310047B19Rik protein pseudo : _no_value transcript_id : XR_034108.1

clone name	MSMg01-374F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377G16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-448C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165J17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-339M03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-093C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546N18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-061D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384K11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-192C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408M18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-416N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521D23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-234N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G03
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-392C23.T7 (MSMg01no392_c23.b1)	MSMg01-392C23.TJ (MSMg01no392_c23.g1)
ACC	AG493778	AG493779
length	791	661
length of high quality (start - end)	443 (76 - 518)	---
definition	CHROMAT_FILE: MSMg01no392_c23.b1 PHD_FILE: MSMg01no392_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:38 2005	CHROMAT_FILE: MSMg01no392_c23.g1 PHD_FILE: MSMg01no392_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:38 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCATCANNATTTCTCCTCCCCATACTTCCTGAACTATACGAAATGT TCTGCACTCTATTCTTTCTTTCTTTCGGTTTGTTTTTCAAGACAGTTTCT GTGTAGCCCTGACTGTCCTGAAATTAACTCTGAAGACCAGACTGGCCTCA AACTCAGAGATCCACCTGCCTCTGCCTCCTGAATGCTGGGATTAAAGACA TGTTCCACCACTGCCTAGGTCCTGCACTCTATTCTTAAAGTTCAGTTATT TGAATAAATTTGCATAGTAATATGATATTATAACAAAGTCCCTATTCCTC CCCTACCCACTACAAGTACTCACACTGACATTCAACCTACTGGAAGGGCT AGTTCTAAGAAGGCACACATTAGGCATGCCTTCCGACCCAGAATTAAGAC CAGTGTATTCCAGGCCAGCCCGTTTTGCACAGCAAGTACCAGGCATGGTC AGACCCTGTCTCAAACAAGAGAAAAGAATGTCACAGGAAAGGGAAAGAAA AAGGGATTCTTTTCCCAGATTCTTTGGTGTTTCCATGTAAAAACAGTTAT TAACTAATCCAATTTTATTCCAATTTATGGCAGGCTACAAACTTACCAAG CAGTTTTGTTAAAAAAAATTACTTGGCTTTTCCCCCTAGAACCTTTTTTA TTTCTAAAAAAAAAGACAGTTATAACGAACGGCCCTCGAGTAACCCTTTT TCGCAGTGAGCAAAAAAAATTCTTGTTCCCCGCTTCTCCAN	TTTTCCATGACAGTGGAGGCTGGGGCCGCCGTTCCAACATGAGGTGACCT AAGAATTTCCGCGAACATCGAATAGATGCCATTANATATTTGAGGTCAAT AAGTTTACAAGGCTTGGCCCCTCAAACCCCCNTCCCCTCCCCCCCCCAAC AACCCCCTTCTTCAAANNNCTCTTTGTTTTTGAAACGGGCAACCCCCGAA CCCCCTTGGGGCTTTCAAAAAAAACCCCAAAACCCCCCACCCCTCCCCCC AGGTTCCCAGGGACCCAAAAAGGTAAAACCCCCCGGGTGGGTCTTCCCCG GGAAACTCCCTCTCCCAAAAAAAACAAGACCCCTGTGGCCCCCCCCCCAA CCCCCGGGACAAATATGGGGGGGGTCCCCNNNCCCCATTTTTTTCTCCCC CGAGGGGGGACTAATTGCGCGGGGGGGAAAACCNCCTCTTCCTCCCCAAC ACCAGGTCTCCCCTGGGGGGGGGGGGCTCTTCTCCCCCCCCCTCCCTTGA AACAAAAACTCTCCCCCCCCGCCGCGTTTAATACCCCCCCCCTCCTCCTC CCCCCCGGGCCTGCGGCCGCCAACATTCCCCCACCCCAGCCGCCCTGTCC CTCTCCTCTCCCCTCTCCTCCGCCCGACGCCGCCCTTTCACCGCCCCTTT TCCACCCTTCG
quality values	Open. Hide. 0 3 6 6 6 8 8 8 9 9 9 22 25 37 37 28 24 22 34 19 22 12 12 9 15 9 9 7 7 8 15 19 19 10 10 10 16 9 9 9 9 11 11 11 14 19 23 28 34 34 28 24 26 28 29 23 23 19 18 3 0 0 3 9 9 9 9 10 11 11 12 10 10 8 8 15 15 33 43 48 53 53 57 57 53 53 50 53 57 57 57 57 59 59 50 53 53 53 47 47 53 50 47 43 47 47 43 43 57 57 57 57 57 57 57 57 59 59 57 44 44 31 31 24 27 21 34 44 59 57 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 68 68 68 59 59 57 57 50 50 50 50 57 57 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 68 57 57 57 52 52 57 57 57 57 59 59 59 59 59 59 59 57 57 57 57 57 57 51 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 51 68 68 68 68 68 68 68 57 59 57 57 54 57 57 57 57 68 68 68 68 59 59 59 68 68 68 68 68 68 68 59 59 59 57 57 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 47 59 59 28 30 12 15 11 10 10 10 10 17 25 34 59 50 50 50 50 53 53 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 68 57 57 57 57 57 46 46 43 43 43 47 47 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 48 47 41 41 39 40 40 44 34 34 32 32 37 39 36 39 25 30 18 30 34 47 34 57 48 48 48 57 57 57 48 57 48 50 48 48 48 48 53 48 48 48 48 43 43 32 37 37 40 40 43 43 48 46 46 34 32 28 20 19 27 25 25 32 37 39 41 46 46 46 48 46 43 43 37 39 39 39 37 43 39 43 43 59 46 34 34 25 28 34 39 39 37 34 31 36 37 25 24 14 15 15 30 34 30 37 33 34 25 25 25 32 26 24 14 26 13 12 12 25 25 28 19 15 14 13 7 7 7 12 10 10 10 11 15 18 22 17 17 17 16 17 22 16 14 17 22 22 32 19 17 19 15 12 15 17 15 15 27 12 12 12 10 9 9 9 12 12 20 22 15 10 11 9 9 8 10 10 23 19 10 9 8 10 10 12 9 11 12 16 16 12 12 15 12 9 9 8 8 9 10 12 10 11 11 8 8 8 11 8 11 11 11 11 13 17 10 10 10 9 8 8 8 8 8 8 8 8 10 8 8 10 10 10 10 10 8 9 11 11 12 15 22 15 14 8 8 8 8 8 8 10 9 10 8 8 8 10 19 22 21 15 15 16 11 10 10 10 11 7 6 6 6 6 9 12 12 8 8 8 10 10 10 12 11 11 11 13 10 12 11 23 23 22 12 13 6 6 8 6 6 6 8 10 10 13 17 11 12 10 10 8 6 6 6 8 8 11 8 10 10 11 11 11 11 11 10 10 10 10 9 9 9 8 8 8 8 10 8 13 10 8 6 6 10 10 8 8 8 8 8 8 8 8 8 8 9 10 9 9 10 16 17 14 11 11 10 10 13 10 6 6 6 10 8 12 11 11 11 11 11 11 11 8 8 8 3 0	Open. Hide. 7 7 7 6 6 7 9 15 15 10 10 10 8 10 15 15 13 10 10 9 20 22 24 24 22 19 21 19 8 8 8 6 6 6 8 8 8 11 8 8 8 8 16 27 22 21 10 10 10 8 8 8 19 9 11 10 9 9 9 12 10 12 9 6 6 6 6 8 8 9 9 9 19 19 33 33 33 33 33 33 33 19 21 3 0 3 23 19 37 37 39 43 26 19 8 8 7 8 7 8 8 9 8 8 11 9 9 9 9 10 8 8 8 8 8 8 8 8 11 10 8 8 8 8 8 6 6 8 8 8 3 0 3 12 13 8 8 8 8 10 10 10 13 12 26 21 15 12 10 9 9 9 10 15 10 9 8 10 14 10 10 10 9 9 18 3 0 0 0 3 6 6 6 6 6 6 6 10 14 15 12 14 15 12 12 10 9 9 9 9 10 11 15 24 10 10 8 8 8 8 11 11 11 11 9 9 9 8 8 8 8 9 8 8 8 8 8 8 9 9 9 9 12 21 19 9 8 7 7 6 7 8 8 9 10 15 11 11 10 10 9 8 6 6 6 8 15 12 12 11 11 11 12 10 11 11 11 9 9 9 8 8 8 8 13 12 12 11 14 12 8 8 8 8 8 8 8 8 8 9 16 16 13 12 14 10 8 8 8 8 8 11 12 11 10 10 10 9 9 9 10 11 10 8 8 8 8 8 8 8 8 8 8 10 10 8 8 9 11 14 14 6 6 6 6 6 6 6 6 6 8 8 10 10 10 8 8 8 8 8 9 10 10 9 9 9 10 13 10 10 10 10 14 17 10 10 8 8 9 9 6 7 8 8 8 8 11 12 11 11 11 16 8 8 10 6 6 7 3 0 0 0 3 15 8 8 6 6 8 8 12 11 8 6 6 6 11 10 8 8 8 8 10 10 17 24 19 9 8 6 6 6 6 6 6 6 6 6 8 8 8 9 9 9 7 10 9 9 9 9 10 10 3 0 3 8 6 6 8 8 8 9 9 10 18 18 10 8 8 8 8 8 7 9 9 9 9 11 9 9 12 11 9 9 11 10 10 10 11 13 10 10 9 9 8 8 6 6 6 6 8 9 14 15 11 9 12 10 14 15 19 18 18 15 16 9 10 8 8 8 8 10 10 8 8 11 10 10 9 11 9 9 10 17 22 23 37 18 13 11 8 6 6 6 8 8 10 10 10 6 6 8 8 8 15 19 20 35 23 24 12 12 10 10 10 10 10 13 10 10 13 19 18 9 16 10 10 11 9 9 9 9 8 8 8 8 10 8 8 8 8 8 7 7 8 6 8 8 8 8 8 8 8 8 8 12 12 12 8 8 8 8 8 10 12 11 11 11 13 10 10 12 10 8 8 10 8 9 9 9 12 13 10 10 10 10 8 8 6 6 6 6 8 7 6 6 6 6 10 10 6 6 6 7 7 12 12 14 14 10 12 6 6 6 8 14 18 23 11 8 8 8 7 7 9 14 16 10 10 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no392_c23.b1 MSMg01no392_c23.b1 CHROMAT_FILE:
MSMg01no392_c23.b1 PHD_FILE: MSMg01no392_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:38 2005
         (443 letters)



>mm_chr2_103609652_103610494
          Length = 843

 Score =  833 bits (431), Expect = 0.0
 Identities = 440/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacttcctgaactatacgaaatgttctgcactctattctttctttctttcggtttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacttcctgaactatacgaaatgttctgcactctattctttctttctttcggtttgttt 260

                                                                       
Query: 61  ttcaagacagtttctgtgtagccctgactgtcctgaaattaactctgaagaccagactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaagacagtttctgtgtagccctgactgtcctgaaattaactctgaagaccagactgg 320

                                                                       
Query: 121 cctcaaactcagagatccacctgcctctgcctcctgaatgctgggattaaagacatgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcaaactcagagatccacctgcctctgcctcctgaatgctgggattaaagacatgttc 380

                                                                       
Query: 181 caccactgcctaggtcctgcactctattcttaaagttcagttatttgaataaatttgcat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccactgcctagctcctgcactctattcttaaagttcagttatttgaataaatttgcat 440

                                                                       
Query: 241 agtaatatgatattataacaaagtccctattcctcccctacccactacaagtactcacac 300
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaataggaaattataacaaagtccctattcctcccctacccactacaagtactcacac 500

                                                                       
Query: 301 tgacattcaacctactggaagggctagttctaagaaggcacacattaggcatgccttccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacattcaacctactggaagggctagttctaagaaggcacacattaggcatgccttccg 560

                                                                       
Query: 361 acccagaattaagaccagtgtattccaggccagcccgttttgcacagcaagtaccaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acccagaattaagaccagtgtattccaggccagcccgttttgcacagcaagtaccaggca 620

                                  
Query: 421 tggtcagaccctgtctcaaacaa 443
           |||||||||||||||||||||||
Sbjct: 621 tggtcagaccctgtctcaaacaa 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information