Query= MSMg01no392_h08.b1 MSMg01no392_h08.b1 CHROMAT_FILE:
MSMg01no392_h08.b1 PHD_FILE: MSMg01no392_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:59 2005
(556 letters)
>mm_chr2_14562271_14563226
Length = 956
Score = 1036 bits (536), Expect = 0.0
Identities = 548/552 (99%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 5 gaattctcccttgaataaatactcactgatatgctcacttggaagccaagaaaagaagct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaattctcccttgaataaatactcactgatatgctcacttggaagccaagaaaagaagct 583
Query: 65 ataaatagccacagctccagccagcagaggaagcagacccgtagctatgccaacgtgcac 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 582 ataaatagccacagctccagccagcagaggaagcagacccgtagctatgccaacttgcac 523
Query: 125 acacaagcatcggatggaatctttgggatatgtctcttttgaaagctgcatctatatcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acacaagcatcggatggaatctttgggatatgtctcttttgaaagctgcatctatatcaa 463
Query: 185 cctcatgaagaacaacaccttttctaagtagaaggcaaatgtgttttcaggaaattctgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cctcatgaagaacaacaccttttctaagtagaaggcaaatgtgttttcaggaaattctgt 403
Query: 245 gagtcagaggaaagttaattgaggaggaaatttggcaggagcttgcttctctgaactgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gagtcagaggaaagttaattgaggaggaaatttggcaggagcttgcttctctgaactgag 343
Query: 305 ttttaaactcattcttccaggttaaatggattgaaaataaaatatacacatgtgtttatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttttaaactcattcttccaggttaaatggattgaaaataaaatatacacatgtgtttatt 283
Query: 365 aataagcaaaaagaagtaacctgtgtgcaggtgtcccagattaaaaaataatgcactgcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aataagcaaaaagaagtaacctgtgtgcaggtgtcccagattaaaaaataatgcactgcc 223
Query: 425 agactaaaataaatggcaaaacaaacaaacaaaaaccgaacaaacaaaaaacaaccctga 484
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 222 agactaaaataactggcaaaacaaacaaacaaaa-ccgaacaaacaaaaaacaaccctga 164
Query: 485 atttaatctttaaaatctactgggagccagtatctttacacaaaaatttcacaagtagaa 544
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 163 atttaatctttaaaatctactgggagccagtatctttacacaaaaatttcacgagtagaa 104
Query: 545 ataaatttctgt 556
||||||||||||
Sbjct: 103 ataaatttctgt 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_h08.g1 MSMg01no392_h08.g1 CHROMAT_FILE:
MSMg01no392_h08.g1 PHD_FILE: MSMg01no392_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:59 2005
(290 letters)
>mm_chr2_14438667_14439356
Length = 690
Score = 507 bits (262), Expect = e-148
Identities = 283/290 (97%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 1 tcacacctatcatgttcctccgtatatgggctatgaataatcctttatctagtgtatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tcacacctatcatgttcctccgtatatgggctatgaataatcctttatctagtgtatcta 260
Query: 61 cactgtataaaatatacacattacttacctggaggccatcttgattactatgtcagctat 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgcataaaatatacacattacttacctggaggccatcttgattactatgtcagctat 320
Query: 121 gttgataatgtgtatccaaataatccttattttgcttcttaaaaaattcactctagagca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gttgataatgtgtatccaaataatccttattttgcttcttaaaaaattcactctagagaa 380
Query: 181 gtggtttctctacttgtagctcatagatactttgagagatgaatgacccttacacaggga 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtt-ctctacttgtagctcatagatactttgagagatgaatgacccttacacaggga 439
Query: 241 ccactcaacattatatggaaaacacagaaattaacattacaattcaaagc 290
|||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 ccactcaacaccatagggaaaacacagaaattaacattacaattcaaagc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
