BAC Information

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BAC

Clone NameMSMg01-392J15
Chromosome2 (Build37)
Map Location 125,030,863 - 125,170,609
singlet/doubletdoublet
Overlap geneSlc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1
Upstream geneLOC100043360, Sema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375
Downstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392J15.T7 (MSMg01no392_j15.b1)MSMg01-392J15.TJ (MSMg01no392_j15.g1)
ACCAG494098AG494099
length789800
length of high quality
(start - end)
244 (75 - 318)265 (74 - 338)
definitionCHROMAT_FILE: MSMg01no392_j15.b1 PHD_FILE: MSMg01no392_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:10 2005CHROMAT_FILE: MSMg01no392_j15.g1 PHD_FILE: MSMg01no392_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,170,366 - 125,170,609)(125,030,863 - 125,031,110)
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCACACGATCCGC
GGAATTCCGCTTTACACAAAACAATGATTAGCAAGAAGTCACCATTTCAA
ACTAGAATAGGAATTTGAACATATCTGAATCCACGTGCTTTTATAAAGCC
AGGGCAAGGGCCAGGCACAGCAAGACTTTGATAATCATGAAAGAACAAGT
CTCATGCTCTTCAGGATGATATTATGGGTGTGTCACTTCATTTGCATTCT
GAGGCATAACACTGGAAGAAATAATTATGTAAATCCTTATTGCTTGATGG
GGAAGTTATAAGATGCTGGTATTTATTAGACTTGGAGGGAAATCAAGATA
TTAGCATCACATGTGTGACACAGAGGAGTAAAAAAATATCTAGGCATTAA
GAATGGCAGAAGGCCGCCGGTGAGATGGCTCAGTGGGCAAGAGCACCCAA
CTGCTTTTCCGAAGGCTCGAAGTTCACATCCCAGCAACCACATGGTGGCT
CACAACCCCCCGTAATGAGATCTGACTCCCTTTTCTGGAGTGTCTGAAGA
CAGCCACCGTGTACTTACCTGTCACACATAACTACCCACCTCCCTTCCCC
CCCCACTACATTAACCACCCCCCCACTCAACTCCCTAAAAAAAAACCAAA
AACAACGGTCTTCATTTTTTTTAAACCCCACCTCACCCACCCTTCTCGGT
TCCCTCTTGCTACAGAACATTCCACACCCCCTCCCCGCCGCGGCTCTTTA
TCTCACGTTATCACCGCTGTTCCCCTCACTTTATTTCAT
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTATTGGAAGCTTGTTGCTTATGGTAA
CCAATCACAGACTACAGTGATGCTGTGGAGGGTGGCCTTATTGTACGGGC
TCTGGGTCTCAGTTCTGCCTATGTGTGAACAGGGCACTTCCAGAGGCAAA
CGTTTAGTAACACAAATAAGAAATGGGCTTGCTTTCAGATTTACGATGTG
TACTACAGGATGAAATAAACCAAACAGCTTTCCCTTCTCTTCTACATCCT
TTACTCTCTTTAGACTGGTGCTTTATTAGGCATCAGAGCCATCTGCAAGT
ATGTAGGATTTCCTGTGTCCAGGATCTTCTCTGAACACTGGAAACGGTTC
CTGCTTTCCCCGTTGTACCCCCTTCACCCACGTATTAATTGGCTGCCCCC
GCAATTCCCTATTCATTACGGACCTTGCCCTCTTTTCCTTTTCATTCTCG
TTTCCCTCCCTTCTTCTTCTTCCCTCTCCTCTTCCCCACTTCCTCTCTTT
CTTCTTCCCCTGCTACCCTCTTTTTTCCCTCCCCCCTGTCTCTTTTCCCC
CCTTTTCTATCTTCCCCCTCTCTCCCCTTTCTTTTTTTTTCCTTTTTTTC
TCCTTTTCTCCCCTCCTACTCTCTACTTTCTCCCCCCTCCACCACTTTCC
CTCCCTATCCCTCCTCCCCCTCCCTTCTTTTTTCCCCCCTACTTTCCTCC
CCCTCTTTCTTCCCTTACCCTCGTCCCCTTCCTCTTCTTCTTTACCCTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_j15.b1 MSMg01no392_j15.b1 CHROMAT_FILE:
MSMg01no392_j15.b1 PHD_FILE: MSMg01no392_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:10 2005
         (244 letters)



>mm_chr2_125170166_125170809
          Length = 644

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattagcaagaagtcaccatttcaaactagaataggaatttgaacatatctgaatccac 60
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 tgattagcaagaagtcatcatttcaaactagaatgggaatttgaacatatctgaatccac 385

                                                                       
Query: 61  gtgcttttataaagccagggcaagggccaggcacagcaagactttgataatcatgaaaga 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 gtgcttttataaagccagggcaagggccaggcacagcaaggctttgataatcatgaaaga 325

                                                                       
Query: 121 acaagtctcatgctcttcaggatgatattatgggtgtgtcacttcatttgcattctgagg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 acaagtctcatgctcttcaggatgatattatgggtgggtcacttcatttgcattctgagg 265

                                                                       
Query: 181 cataacactggaagaaataattatgtaaatccttattgcttgatggggaagttataagat 240
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 cataacactggaagaaattattatgtaaatccttattgcttgatggagaagttataagat 205

               
Query: 241 gctg 244
           ||||
Sbjct: 204 gctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no392_j15.g1 MSMg01no392_j15.g1 CHROMAT_FILE:
MSMg01no392_j15.g1 PHD_FILE: MSMg01no392_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:11 2005
         (265 letters)



>mm_chr2_125030663_125031327
          Length = 665

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattggaagcttgttgcttatggtaaccaatcacagactacagtgatgctgtggagggt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattggaagcttgttgcttatggtgaccaatcacagactacagtgatgctgtggagggt 260

                                                                       
Query: 61  ggccttattgtacgggctctgggtctcagttctgcctatgtgtgaacagggcacttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccttattgtacgggctctgggtctcagttctgcctatgtgtgaacagggcacttccag 320

                                                                       
Query: 121 aggcaaacgtttagtaacacaaataagaaatgggcttgctttcagatttacgatgtgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcaaacgtttagtaacacaaataagaaatgggcttgctttcagatttacgatgtgtac 380

                                                                       
Query: 181 tacaggatgaaataaaccaaacagctttcccttctcttctacatcctttactctctttag 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tacaggatgaaataaaccaaacagctttcccttctcttctacgtcctttactctctttag 440

                   
Query: 241 actggtgc 248
           ||||||||
Sbjct: 441 actggtgc 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)