BAC Information

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BAC

Clone NameMSMg01-392K01
Chromosome2 (Build37)
Map Location 107,452,112 - 107,452,586
singlet/doubletsinglet
Overlap genenone
Upstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392K01.T7 (MSMg01no392_k01.b1)MSMg01-392K01.TJ (MSMg01no392_k01.g1)
ACCAG494118AG494119
length754758
length of high quality
(start - end)
478 (48 - 525)431 (73 - 503)
definitionCHROMAT_FILE: MSMg01no392_k01.b1 PHD_FILE: MSMg01no392_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:13 2005CHROMAT_FILE: MSMg01no392_k01.g1 PHD_FILE: MSMg01no392_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTGATCTGAGCTTGTTGAATGAGGCTGCATTTTGGCTGGTAC
ACAATGGGAACTCATAGATGTGGGCTCCTGTATAACAAAGCTGTGAATTT
CCTTTGAACTGTGGATGGTGCAGAGTACAGGATGTTCTTCCCACAAGGTG
GCTTTCTAGAATGGTAAGTGAATGCACTTGAAAGAAAGGATATGAAGGAT
GCCTTGGCATATCCAGATTATCTCTCCGAGAAAGGCAAAGGTCTTGAAGG
CATGTTCCTGTCTCTTTTCACACAAGAGCAAAGATTGTAAGATAAAACAG
CAAGTGTATTCCCTCTCTGTATTTGTATTTGCTTATGCCAACTATAAACA
CAACCTCGTGCTTTGTTTGCTTTAATAATAAAAACAAAAAGTGCTTTGAT
TGCACTATTCATGAGCTTAGAATCCACATATCCCCTGGTGTGCCCACTGA
AATCTTTGGAATGTATCTTTGTTGGTCATGGGGTGGGCCCATCGTGAAAG
CTTTGTGAGGAACAACATGATGTCCTTCCTTTACGAATGACTTAACCTAC
ATGTGTAAGCTAATGCTATGCCAAATGGATTTGTTGATGGTAACAATGCT
TAACCATGCCACTTAAAGGAGCTTTAACGCGAATCTACCGAGAGACACCA
CAAAGCGCAGCTGATTCCCCTTACTTCCCTGGGTTACCGGTTCCCACCAC
CGCA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAACTGCGGATTATTGAAAGGCCAAGA
AGCGCCTAAAGAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACTTCACAGCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGTAAGGATGTGGAGAAAGAGGAAC
ACTCGTCCATTGCTGGTGGGGTTGCAAGCTGGTACAACCACTCTGGAAAC
CAGTCTAGTGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCA
GAAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTACAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATCACTAGGCAAACTGATGGACCTGGACGGCATCCCCCTGAGGG
AGGTACCCCCATCACCAAAGAACTCACACCATATGTACTCACTGAGAAGT
GGATATTACCCCCTGATACCTAGAATACCCCCGACACCCCATACCATTTT
GCCTAACCCCTTGAAACTTCCGAAGAACCAACACCAACGTGGGGGACCCT
TTGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_k01.b1 MSMg01no392_k01.b1 CHROMAT_FILE:
MSMg01no392_k01.b1 PHD_FILE: MSMg01no392_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:13 2005
         (478 letters)



>mm_chr2_107451909_107452786
          Length = 878

 Score =  903 bits (467), Expect = 0.0
 Identities = 473/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttgatctgagcttgttgaatgaggctgcattttggctggtacacaatgggaa 63
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattccttgaactgagcttgttgaatgaggctgcattttggctgctacacaatgggaa 263

                                                                       
Query: 64  ctcatagatgtgggctcctgtataacaaagctgtgaatttcctttgaactgtggatggtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcatagatgtgggctcctgtataacaaagctgtgaatttcctttgaactgtggatggtg 323

                                                                       
Query: 124 cagagtacaggatgttcttcccacaaggtggctttctagaatggtaagtgaatgcacttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagagtacaggatgttcttcccacaaggtggctttctagaatggtaagtgaatgcacttg 383

                                                                       
Query: 184 aaagaaaggatatgaaggatgccttggcatatccagattatctctccgagaaaggcaaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagaaaggatatgaaggatgccttggcatatccagattatctctccgagaaaggcaaag 443

                                                                       
Query: 244 gtcttgaaggcatgttcctgtctcttttcacacaagagcaaagattgtaagataaaacag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcttgaaggcatgttcctgtctcttttcacacaagagcaaagattgtaagataaaacag 503

                                                                       
Query: 304 caagtgtattccctctctgtatttgtatttgcttatgccaactataaacacaacctcgtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caagtgtattccctctctgtatttgtatttgcttatgccaactataaacacaacctcgtg 563

                                                                       
Query: 364 ctttgtttgctttaataataaaaacaaaaagtgctttgattgcactattcatgagcttag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctttgtttgctttaataataaaaacaaaaagtgctttgattgcactattcatgagcttag 623

                                                                  
Query: 424 aatccacatatcccctggtgtgcccactgaaatctttggaatgtatctttgttgg 478
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatccacatatcccctggtgtgcccactgaaatctttggaatgtatctttgttgg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)