BAC Information

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BAC

Clone NameMSMg01-393E19
Chromosome2 (Build37)
Map Location 111,144,204 - 111,144,656
singlet/doubletsinglet
Overlap genenone
Upstream geneBbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278
Downstream geneOlfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393E19.T7 (MSMg01no393_e19.b1)MSMg01-393E19.TJ (MSMg01no393_e19.g1)
ACCAG494630AG494631
length778788
length of high quality
(start - end)		457 (39 - 495)398 (68 - 465)
definitionCHROMAT_FILE: MSMg01no393_e19.b1 PHD_FILE: MSMg01no393_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:11 2005CHROMAT_FILE: MSMg01no393_e19.g1 PHD_FILE: MSMg01no393_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TTATAATCAATACTCCTGTTATATTATTTTATAACTAATATCTGGATTTT
TATGGTAGCAATTGCTTAGCAAATTAACTCAATAATGAGTTCATGGATGG
GCAGGATACAGCCATTGTGGAACCCTTGCCTAACTTATACAAGGCACTGT
ATTCAATTTGAAGTCTGCAAAACTTATTATAATTACTGAATTGTTGATTT
TTTACTTAATACAATTTATAATAATTTATAAATAATGTATTAAATCACAT
TGTGCTAATGTCTTTTCAGAGTTTTATGTGATATGCTCTGGGCCTTGACT
CATCAAGCACTTTCAGCAGTTCTATTTGATATTAATTAGAAACACATTAC
AATTAGCCAGAACATGAGGAAAACAACGTAATCACTCTTTGTGTTCATTA
TGGACAACTATGAACAAAGGAAACCAAAAGCAGCAACAGCGGGTACAAAA
AGTCAACAATTGAAATTGCTTATNAGTAAAACCTGCCAATCTGGAAGGAG
ATATCATGAGCCAAAATCTGTGGTATGTCCCCTTTATGTGCCCCCTGAAA
TGAATAAGATAAAAAAAGCTTTGGTAAAACTATTGGATTATGAACCTCCA
TTTTGCGAAAGAACTGGGAAATCCCACAAAGGTTTTTTCTTGAAAAAAAC
AATTTGAACTTGGGAAATTTTATTGGAGAACAAAAAGGAACTACAGGGCA
AAAAGGGGGGGGATAAAAAAAATTATTG

GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAGAGAATTCTCAACTGAGAAATCTTAAGCAA
CAAAGAATCACTAAAAGAAAAGTTCAACATTCTTAACTATTAAGAAAATC
CAAATCAAAACTACTCTGAGAATACATCTTACAGCTGTCAGAATAGCTAA
GATCAAGAATCCAAATGGCACTCATGCTGTTGTGAATTTGTAGTTCATGT
AGTTGCTGGTGGGAGTAGAAACTTGTATAGCCACAATATAGCAGTGTCTC
AAAAGTTGAAAACTGATTTACCTCAAGACTCATATATAGCTCTCTAGAGC
ATATGCCTAAAGATGTTCTTTCAGGTCACAAGGACACTTGCTCAATTATG
TTCATAGCAGCTTTATTTATAATAGTCCAAAAATGGAAACAACCTAGATC
TCCCTTAAGCAAAGAATGGATAAAAGAAGTGAGGTACGTTTACATAATGG
AATTGTTGGGAACACGAACCTCCAAACCTGTGATATTTCACCGACTCCCA
CTCCCTTTTTAAGGGACAGCCACCCTATTCCCCGAAACCACTTGGGGTCC
CTCCCCCCTTTTACCTGGGGTAACTTCCCACCCAAATTTTAAGAAGGGGA
TTCCCCCCCATTTTTTTTCTTTTTCCCCTTTATTATTTGGGTGGGGCTGG
GGCTCCTTTCCTCCAAATAATTTTGGGAAATTGTTTTCTCGCGGGGCCCC
CCTAATTCGTTTACCCCCAAATCTTTGGTGGTCATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_e19.b1 MSMg01no393_e19.b1 CHROMAT_FILE:
MSMg01no393_e19.b1 PHD_FILE: MSMg01no393_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:11 2005
         (457 letters)



>mm_chr2_111144000_111144856
          Length = 857

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattataatcaatactcctgttatattattttataactaatatctggattttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattataatcaatactcctgttatattattttataactaatatctggattttta 264

                                                                       
Query: 65  tggtagcaattgcttagcaaattaactcaataatgagttcatggatgggcaggatacagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggtagcaattgcttagcaaattaactcaataatgagttcatggatgggcaggatacagc 324

                                                                       
Query: 125 cattgtggaacccttgcctaacttatacaaggcactgtattcaatttgaagtctgcaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattgtggaacccttgcctaacttatacaaggcactgtattcaatttgaagtctgcaaaa 384

                                                                       
Query: 185 cttattataattactgaattgttgattttttacttaatacaatttataataatttataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttattataattactgaattgttgattttttacttaatacaatttataataatttataaa 444

                                                                       
Query: 245 taatgtattaaatcacattgtgctaatgtcttttcagagttttatgtgatatgctctggg 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 taatgtattaaatcacattgtgctaatgtcttttcagggttttatgtgatatgctctggg 504

                                                                       
Query: 305 ccttgactcatcaagcactttcagcagttctatttgatattaattagaaacacattacaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccttgactcatcaagcactttcagcagttctatttgatattaattagaaacacattacaa 564

                                                                       
Query: 365 ttagccagaacatgaggaaaacaacgtaatcactctttgtgttcattatggacaactatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttagccagaacatgaggaaaacaacgtaatcactctttgtgttcattatggacaactatg 624

                                            
Query: 425 aacaaaggaaaccaaaagcagcaacagcgggta 457
           |||||||||||||||||||||||||||||||||
Sbjct: 625 aacaaaggaaaccaaaagcagcaacagcgggta 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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