BAC Information

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BAC

Clone NameMSMg01-393J03
Chromosome2 (Build37)
Map Location 128,030,679 - 128,031,027
singlet/doubletsinglet
Overlap geneLOC100043424
Upstream gene1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11
Downstream geneLOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393J03.T7 (MSMg01no393_j03.b1)MSMg01-393J03.TJ (MSMg01no393_j03.g1)
ACCAG494835AG494836
length730771
length of high quality
(start - end)		545 (40 - 584)348 (63 - 410)
definitionCHROMAT_FILE: MSMg01no393_j03.b1 PHD_FILE: MSMg01no393_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:33 2005CHROMAT_FILE: MSMg01no393_j03.g1 PHD_FILE: MSMg01no393_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TGAAGCCAGGAGGAGGGATCAGGGAAAGAAGACATTCTGGTAGAGAGAAT
TTTGTGCTGAAATATCTGGGACAATGTAGCATTTAGTTTTTGCTACCCCG
CTTTAAGCTCTGGGTGGACGACACCACCAGTGCCATCGAGGTTCCCTTGG
ATTCATGGATGAAACACACACATTAACTTATTTTCATCCTGCTTTATTGG
CTCAATTGCTGGCCTCTTCAATTCTCCTGTGGCTAGCATGCCCTTCCCGA
TACTCTTAGTTAAGCACATCTTAATGTGCCCTTAGTTGCATTTCCAATCT
CCCACATAGGGAAGTGGCCTATGGCCGCTCTGCCCAAGATCTCACATGAC
TAGTCACCTTTTCTCCTCCCGAAGCATGGTGAAATCTCCCTTCCTCTTCC
TCTTCCTGCATCTCTTAGCTTGTCTGTGGGTACCCAGAAATCCCTCCTCT
TTCTTTCTGCCCAATAATTGGCCCTTGGCATCTTTATTGATCCATCAAGA
ACCAATTGGGGAACAGGAACTTAGCATCAAAACCACCCCCTACAGACCAT
GGTTGGGGAAGGGAAAGTCATTTGGTTGAATGCTTATCTAGCATTTACAA
TGTGCTGAACCCTTCCCCAAACTGCCGAGACCAACTTTGAATGCCCATGC
TTGTAAAAACCCCGAACTCCGGAGTGGGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACTCACTCTTCTTTGGGTCAAATTGGAACATAAAGATA
TAATGAAATCATTCACTTGCATTCAGACTTTACCCATCCCTTATAGATCA
ATGGGGACAAGTTTGGAAGACATATCACAGCATCAGACAAATAGAAGAAT
GGAAATGCATTACAGATCTCACGCAGAGATTGGTCAAATGATTGCAGCAA
ATGAGTCGAAATATGTCACAGAACTTGTACATAGACTATTCAAAATGATT
GCCAAAGAACTGAAATAAATCACAAAATATTTGCATAGATTATTCAAAAT
GATCTCTGTACAGTTTCATCTAAAAAAAAAAAAGCTTTTACATCAGTATT
ATCAGCACCCAAGGGCAATGTACAATTTCAGCCTAAATTGACTGTCCTAC
TTTCTCCCCAGGGCAGCATTCTCAGAAGGATCCATCTATGATCCAGGCAG
AAAGAGCACATGTATCTGAATGGTCCACTATCTTCTTCAAACTGATTTCC
ACAAAGACCTCTATCCAATCCTTATAATCTGTTTCTCTTTGCTACAGGGT
CATTCTGTACCAACAGAAATGTCTGGACCCTTCTCCTGGGAAAGGGACTT
TGAACCTTTCCCATGGTTCTCCACATCTGGTTCTCACCCATTCTCCCCTC
ACCGGTGGAAATGATGATGAAGTGGGGGCTTTATATCCCCAATTTCCCCT
CCCTTTTTTCTTTACGTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_j03.g1 MSMg01no393_j03.g1 CHROMAT_FILE:
MSMg01no393_j03.g1 PHD_FILE: MSMg01no393_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:33 2005
         (348 letters)



>mm_chr2_128030479_128031230
          Length = 752

 Score =  594 bits (307), Expect = e-174
 Identities = 337/349 (96%), Gaps = 4/349 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcactcttctttgggtcaaattggaacataaagatataatgaaatcattcacttgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 actcactcttctttgggtcaaattggaacataaagatataatgaaatcattcacttgcat 490

                                                                       
Query: 61  tcagactttacccatcccttatagatcaatggggacaagtttggaagacatatcacagca 120
           ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 489 tcagactttacacatcccatatagatcaatggggacaagtttggaagacatatcgcagca 430

                                                                       
Query: 121 tcagacaaatagaagaatggaaatgcattacagatctcacgcagagattggtcaaatgat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcagacaaatagaagaacggaaatgcattacagatctcacgcagagattggtcaaatgat 370

                                                                       
Query: 181 tgcagcaaatgagtcgaaatatgtcacagaacttgtacatagactattcaaaatgattgc 240
           |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 369 tgcagcaaatgagtcgaaatatatcacagaacttgtacatagactagtcaaaatgattgc 310

                                                                       
Query: 241 caaagaactgaaataaatcacaaaatatttgcatagattattcaaaatgatctctgtaca 300
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 309 caaagaactgaaataaatcacaaaatacatgcatagattattcaaaatgatctctgtaca 250

                                                            
Query: 301 gtttcatct----aaaaaaaaaaaagcttttacatcagtattatcagca 345
           |||||||||    ||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtttcatctcaaaaaaaaaaaaaaagcttttacatcagtattatcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 752
Length adjustment: 9
Effective length of query: 339
Effective length of database: 743
Effective search space:   251877
Effective search space used:   251877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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