Query= MSMg01no394_c03.b1 MSMg01no394_c03.b1 CHROMAT_FILE:
MSMg01no394_c03.b1 PHD_FILE: MSMg01no394_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:24 2005
(577 letters)
>mm_chr2_98208421_98209397
Length = 977
Score = 982 bits (508), Expect = 0.0
Identities = 561/583 (96%), Gaps = 10/583 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctttcttgcatggaaggaagaaagtgggtgttgaactgccatgtagaagtgtg 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggaattcctttcaggtatggaaggaagaaagtgggtgttgaactgccatgtagaagtgtg 255
Query: 64 agctgtaatctagacctgggaggcaaccatttctaggagtctttggtgatcactgagatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agctgtaatctagacctgggaggcaaccatttctaggagtctttggtgatcactgagatt 315
Query: 124 cagaaaaggctatctgtccgtcctgattcctgatgaaatcagtggagagaatgtgttgcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cagaaaaggctatctgtccgtcctgattcctgatgaaatcagtggagagaatgtgttgcc 375
Query: 184 tgtactgtgaaacttctacttttcctagtggtcctttgcacatgtgcacacaaaat-ctg 242
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 376 tgtactgtgaaacttctacttttcctagtgatcctttgcacatgtgcacacaaaatgctg 435
Query: 243 tcatatttgaaagatatctaaatattatacaatgtctgacttt-------aaaaaaaacc 295
||||||||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct: 436 tcatatttgaaagatatctaaatatcatacaatgtctgacattaaaaaaaaaaaaaaaac 495
Query: 296 aaccttattctgagaaaagcatttctcaccacttcacatcttttta-tttttttttccat 354
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 496 agccttattctgagaaaagcatttctcaccacttcacatctttttaatttttttttc-at 554
Query: 355 accacaaactgttctggttctggtttcatttttctacttaaaaccccattggtaccttaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 accacaaactgttctggttctggtttcatttttctacttaaaaccccattggtaccttaa 614
Query: 415 gtattttacttttcctagaccaatattttgaggtgactaatttttggttatcaagtctgc 474
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 615 gtattttacttttcctagaccaatattttgaggtgactaatatttggttatcaagtctgc 674
Query: 475 accctaaatgtttcaaggactcccagctgccaatatcttaaatganaatgaggatgaaaa 534
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 675 acccttaatgtttcaaggactcccagctgccaatatcttaaatgaaaatgaggatgaaaa 734
Query: 535 attcaataagaaagcatttcaagttcccattaatctggctctg 577
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 735 attcagtaagaaagcatttcaagttcccattaatctggctctg 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_c03.g1 MSMg01no394_c03.g1 CHROMAT_FILE:
MSMg01no394_c03.g1 PHD_FILE: MSMg01no394_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:24 2005
(380 letters)
>mm_chr2_98098886_98099665
Length = 780
Score = 665 bits (344), Expect = 0.0
Identities = 376/400 (94%), Gaps = 21/400 (5%)
Strand = Plus / Plus
Query: 1 aagttcttacatgtgaagagaaggttctcttaactgctgcgtcatctctcttgccaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aagttcttacatgtgaagagaaggttctcttaactgctgcgtcatctctcttgccaaatg 239
Query: 61 gacttttaaaacaattcttagctttattttgagatagaatttattattattattgttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gacttttaaaacaattcttagctttattttgagatagaatttattattattattgttgtt 299
Query: 121 gttgttgttg---------------------ttcttcttcttcttcttgtaaatcacctc 159
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 300 gttgttgttgttgttcttcttcttcttcttcttcttcttcttcttcttgtaaatcacctc 359
Query: 160 atttttctaaaactgcttcaactttggctttatctttgatctatcatttcagttgtttaa 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atttttctaaaactgcttcaactttggctttatctttgatctatcatttcagttgtttaa 419
Query: 220 tataagtttgcattgaatgaaagaagaaatatttacatttcataaattgatagatttcag 279
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 420 tataagtttgtgttgaatgaaagaagaaacatttacatttcataaattgatagatttcag 479
Query: 280 tataaattaattcttgatgtccccattaatagcttcaatttttctattttctctttaaag 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tataaattaattcttgatgtccccattaatagcttcaatttttctattttctctttaaag 539
Query: 340 tatatttaaaaatattttcagaaagtcagatatcatttgg 379
||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tatatttaaaaatattttcagaaagtcagatatcatttgg 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
