BAC Information

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BAC

Clone NameMSMg01-394D04
Chromosome2 (Build37)
Map Location 147,163,552 - 147,163,970
singlet/doubletsinglet
Overlap genenone
Upstream geneA230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920
Downstream genePax1, LOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394D04.T7 (MSMg01no394_d04.b1)MSMg01-394D04.TJ (MSMg01no394_d04.g1)
ACCAG495311AG495312
length790882
length of high quality
(start - end)
428 (44 - 471)36 (80 - 115)
definitionCHROMAT_FILE: MSMg01no394_d04.b1 PHD_FILE: MSMg01no394_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:30 2005CHROMAT_FILE: MSMg01no394_d04.g1 PHD_FILE: MSMg01no394_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCGTGGCTTACTGGGTTTAAAAATCATCATCACAAACCTAGTC
TGTTGACAGAACACCAGGTTTTCTAAGAGTCAAGCTCGAAGTCTTGAAAA
TAAATAAATGGAATGTATTTAAAGACTTAAATGTCTTTCTCATGGTGGTT
GTATGAACATATGTCTGCTTCATTCTGCTGAACTAAAACTCCAGGGGATT
CAATATTTCTTTCATTTTCAATAAATATACCTCACTTTCTTATCTTCCCC
ATATGCCTGTACCATAGGCTGACTTGTTCTTCTGTTATGCCATTAAAATA
TCCCAAGAGGACGTTATTCACACAGGTCCTTGGAGTGCATGGAATCATTT
GTCTTTTCTGTGTTGAATGCTGTATTTTGGAGATATTTGTAATCTGTGGC
AATGGGTTGGCCACTCGCCCCATCTTCCGGGCACTCTATGTCTCAGGTAA
CTACTTCTTGTTATTTTGTCCAGCCCAGGTAAGGAGGATGCTCTCTTCTT
GTTTCTTCACCATCTTAATTTTCCCCCCTTTCCTCATATAACCCAACCCT
GTTTCCAACTCTCTTGACCGTCCTCTATCTCTCTTTTCCTTAGATATTCT
CTTTTCAAGAATTTCCCTTTCCCCTCATTTACTTTCCTTTTTCTTACTGC
CTCATTAATCTTTCTTGATGTCCTCACTTCCTTTTTCCCTCTTCCATCCT
TTTATTCCCCATCCTTTGCCATATCTTCTCTTATTACTCA
TTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAATTAATGGTGGGGAGG
GAGTGCTTGCTTGTCCGCCTTGTCATAGACTCCCCTCCACCCCATTTCAC
TGTAGCATCACCAGTTTACGGATGCCGTGGCTGTCCTAATACCTACTCCT
GTCGCTTCAACTATCGTGACCAGAAGGTAGTTCATTCCACAGGCTCTTTT
TCTGTATTGTCCGAGGACCCATCCTTCCCCTGCGGACTCTGGATGTTACC
TGCTGTTTGTTCAGCTCTCCCCTCACTTTTTATCTTTCCTTCGATCTCCT
GCCTTGTCTTGTGTTTTTCACACCACTTATTTCCCCTCTCACCCTCGGCC
TCTTTTCCCCTCATCCTTCTACTCTTTATCGTCCCCCTTTTCCCCCCTCC
CTCTTCTGCTTTTTTCTTTTTATCCGTCTCCCTTCTCCTCTTCCCTTTTT
TTTTTTTCTTTTCGCCCCCCCCTTTTCCCCCTTCCTCTCTTCCCTTCTCT
CTCTTTTTTCCTTTTCCTTTTCTTTACCTTTTATCCCTTGTTCCTTTTCA
CCTTTTTTCTTTTTCACCCCGCCCCTTTCTCTCGCTCAAATCTCCGCATC
TCTCTCTTCCTTTTTCCCTCCTTTTCCCCTTTCCGTTTTTTTCTTCTCTC
CTTCTCCCCTATTCCTTCATTACCCACCCCCTCCATCCTATCTACCCTCC
ACTCGTATATACCACTATTTATTCCCTACTCCACACACCGCCCTTCTTTT
TCCTTCTGCCTTTAATCCTCTATACCCGCTTTTTCCTCTTCCCCCTCATC
TCCTTACTTACTCCTCATCCCTTATGTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_d04.b1 MSMg01no394_d04.b1 CHROMAT_FILE:
MSMg01no394_d04.b1 PHD_FILE: MSMg01no394_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:30 2005
         (428 letters)



>mm_chr2_147163343_147164170
          Length = 828

 Score =  795 bits (411), Expect = 0.0
 Identities = 417/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaattcgtggcttactgggtttaaaaatcatcatcacaaacctagtctgttgacagaac 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggaattcgtggcttactgggtttaaaaatcatcatcacaaacctagtctgttgacagaac 569

                                                                       
Query: 70  accaggttttctaagagtcaagctcgaagtcttgaaaataaataaatggaatgtatttaa 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 accaggttttctaagagtcaagctcgaagtcttgaaaataaataaatggaatgtatttaa 509

                                                                       
Query: 130 agacttaaatgtctttctcatggtggttgtatgaacatatgtctgcttcattctgctgaa 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agacttaaatgtctttctcatggtggttgtatgaacatatgtctgcttcattctgctgaa 449

                                                                       
Query: 190 ctaaaactccaggggattcaatatttctttcattttcaataaatatacctcactttctta 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctaaaactccaggggattcaatatttctttcattttcaataaatatacctcactttctta 389

                                                                       
Query: 250 tcttccccatatgcctgtaccataggctgacttgttcttctgttatgccattaaaatatc 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcttccccatatgcctgtaccataggctgacttgttcttctgttatgccattaaaatatc 329

                                                                       
Query: 310 ccaagaggacgttattcacacaggtccttggagtgcatggaatcatttgtcttttctgtg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ccaagaggacgttattcacacaggtccttggagtgcatggaatcatttgtcttttctgtg 269

                                                                      
Query: 370 ttgaatgctgtattttggagatatttgtaatctgtggcaatgggttggccactcgcccc 428
           ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 268 ttgaatgctgtattttggagatatttgtaatctgtgggaatgggttggtcactcgcccc 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)