BAC Information

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BAC

Clone NameMSMg01-394J09
Chromosome2 (Build37)
Map Location 160,272,494 - 160,273,005
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043689, Gm826, Mafb
Downstream geneLOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394J09.T7 (MSMg01no394_j09.b1)MSMg01-394J09.TJ (MSMg01no394_j09.g1)
ACCAG495608AG495609
length1,247758
length of high quality
(start - end)
---513 (82 - 594)
definitionCHROMAT_FILE: MSMg01no394_j09.b1 PHD_FILE: MSMg01no394_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:01 2005CHROMAT_FILE: MSMg01no394_j09.g1 PHD_FILE: MSMg01no394_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCGCACTCCTTGTAGTTTGCTCAGATAATGGAGCGTATTCATAGTCAG
ACATCGTGCGCCTTATCAAACGTAGAGTCGCTTTGGGTGTGGTTGGGAGC
GGGCATAGGCGGGTGGGAGGTGTGGGTCGAGCAGTCAGAGCAGGAGAAGG
TTAAAGGGATATAAAAGTATAGAGACTGAGTAATGATTGTAATAATCGAT
GTCTTTCAAATAACACACTTTCGTGGGGGTGATGTAAACATCGTCTGTTT
TTATTTTCATAAGACGGCAGTCCGCCGGGTGGAATGATCTGTTGCGGGAC
GCCCTACCCCTATAATTCGTTCGGCCTGCCGGGTCGCGCTCATGCGATCT
AACTTTACTGTTTCGGGCCGTCGATGCTCGTCCGATGCGGTCGATACGCG
CATTGTATATGCGAGGATAAATAGTGGTTNAGACACATATTCGTGACGTA
TTTACAGATAAGGGATATTGCTATACCCGGCGCCCAATCTATATGGACCT
ACTCTCTACCCCTACCCTATTTTTCCCATTACACGCTATCCTTACACTGT
CGGCGATAATGCTCGCAATATACCGTATTACCCGCACACACCTCCTTTGT
ACGCCACGAAATACGGTGCGTGGGTGTGTTGCACAGAGTAGAGTAAATGA
GACGAGAAGGTATATATTCGGGGCGAGCAGAATATAGCGTCGTAGTTTAT
CTGTGTCACATTTATATCTTTCTGTCGCTTTCGTCACTTCCGGTCTGAGC
CGTTATCGTCAGCTTCTTCCGCGATTCGTCCAAGGTGTGGAACCCACAAC
GATTCGTACGTCGCGCACCCTACACCGTAGCCCATTCGTGCCACCTATCG
CCCTAGCGCGGTTACATATGTACGTACGCCTATTTTGTTTCGTCCTGATC
ACTTTACCCGCGCGTACCCGTTATCCTTGCTTCCATAGTTCGCTGAGGAG
TTCCGAGGTCGAGGCAGCTACGATAGCCCGCCGTATTCGACGCAACTATA
ATAGGCGGATCGCGTTNGGCGCGCGCATACGCGGTGGATGAAAACGCGAT
ACGATCGTGATAATAAGATACGGCTACAGTAGCGGTAACGCTGTTCTAGC
GGTACTCCGTAGAGTCGTCGATGCGGTCGTCACGCGACTCCAACATTAGT
GAGATATAATAGCGATATTTGATACGAATCGACTCGCCCGCTATATCCTA
ACACATAGCGTCGCGACGATATATATGTGTCCTGTCTCCGCGACTCG
TTCCCTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACAGTGGTCCTCAAGCT
GGGATGACTGGAGCAGTGAGAGCTGAGCAGGGAGAAACAGGCTCAGTGGA
GGATGCCTGTATCTAGTTGGCACTAAGAGCCGATTTGGGCTGACATCTGG
GGAAGTGTGGCGAGTGCTTTTGATGATGAAGTGTTTTCAGTGGCTGAGAA
CAAGCCCCTGGGGCCTGCAGAGCAAGCATTCGCTGTGCCCTGCTTCCCAC
AGTTCTTCATTTCCTGAGGAAGCATTCCTCTTTTCTGTTTCTGGCCAAAG
AGTAGCCGCCAGACTCCGGAGCATAGGTGGTCTGAACGAGACAGAAACCC
GGAGAAGAAGGGGGCTGCGTTAGGGCTCTGGGGCAGAAGGGAAGGATGTT
AGAGGTGGATTCCTGGACTATGCTTCTTCAGAGCTGTCAGCCACAGGATA
TGAGCCTGCAGGGTGTCTGGGCAGTTCATTCACCTTAGGATGTCACCATC
TGTCACCCCTAAAACACCCATGATCAGCTGTAGTGAGAACAACAGCTCAC
TAGTGTTTATGGTTTAGAGGGCTAGTGCCCATGCTCCTGCTTTATCCGTA
TTGCCACCTATTTGACCCTTTGTTCCTTTGGGGGCTTCCTATTCCTTTTG
GTTTGTCCCATCCCCCGGTGTTTGCCTATCCCTTCAAATCGGAATGTGTT
TTGGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_j09.g1 MSMg01no394_j09.g1 CHROMAT_FILE:
MSMg01no394_j09.g1 PHD_FILE: MSMg01no394_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:01 2005
         (513 letters)



>mm_chr2_160272294_160273205
          Length = 912

 Score =  940 bits (486), Expect = 0.0
 Identities = 506/516 (98%), Gaps = 7/516 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacagtggtcctcaagctgggatgactggagcagtgagagctgagcagggagaaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ccacagtggtcctcaagctgggatgactggagcagtgagagctgagcagggagaaacagg 653

                                                                       
Query: 61  ctcagtggaggatgcctgtatctagttggcactaagagccgatttgggctgacatctggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctcagtggaggatgcctgtatctagttggcactaagagccgatttgggctgacatctggg 593

                                                                       
Query: 121 gaagtgtggcgagtgcttttgatgatgaagtgttttcagtggctgagaacaagcccctgg 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaagtgtggcgagcgcttttgatgatgaagtgttttcagtggctgagaacaagcccctgg 533

                                                                       
Query: 181 ggcctgcagagcaagcattcgctgtgccctgcttcccacagttcttcatttcctgaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggcctgcagagcaagcattcgctgtgccctgcttcccacagttcttcatttcctgaggaa 473

                                                                       
Query: 241 gcattcctc---ttttctgtttctggccaaagagtagccgccagactccggagcataggt 297
           ||||||| |       ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gcattccccagg----ctgtttctggccaaagagtagccgccagactccggagcataggt 417

                                                                       
Query: 298 ggtctgaacgagacagaaacccggagaagaagggggctgcgttagggctctggggcagaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 416 ggtctgaacgagacagaaacccggagaagaagggggctgcgttagggttctggggcagaa 357

                                                                       
Query: 358 gggaaggatgttagaggtggattcctggactatgcttcttcagagctgtcagccacagga 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gggaaggatgttagaggtggattcctggactatgcttcttcagagctgtcagccacagga 297

                                                                       
Query: 418 tatgagcctgcagggtgtctgggcagttcattcaccttaggatgtcaccatctgtcaccc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tatgagcctgcagggtgtctgggcagttcattcaccttaggatgtcaccatctgtcaccc 237

                                               
Query: 478 ctaaaacacccatgatcagctgtagtgagaacaaca 513
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctaaaacacccatgatcagctgtagtgagaacaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space:   453706
Effective search space used:   453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)