BAC Information

Click to search

BAC

Clone NameMSMg01-395B04
Chromosome2 (Build37)
Map Location 121,974,313 - 121,974,828
singlet/doubletsinglet
Overlap gene4930424G05Rik, B2m
Upstream geneAdal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2, Eif3s1
Downstream geneTrim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395B04.T7 (MSMg01no395_b04.b1)MSMg01-395B04.TJ (MSMg01no395_b04.g1)
ACCAG495978AG495979
length747864
length of high quality
(start - end)
520 (50 - 569)165 (94 - 258)
definitionCHROMAT_FILE: MSMg01no395_b04.b1 PHD_FILE: MSMg01no395_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:47 2005CHROMAT_FILE: MSMg01no395_b04.g1 PHD_FILE: MSMg01no395_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTTGTCCCCATAAATTTAAATTAGCATAAACCACATTTT
TCCTTGCATTTGAGGTTTTGGAAACAAGAACATGCTAAATGCCACAGGTT
CATCATGCCTGGAATTCTCTGGACAAGAACCATCCCTTCCACAATTAAGT
CCAGTGTTGGGTCAGGTTTAAATCTGGTCTCTGCCATATTTCTACCTCCA
CGACTTTGGTAGTTACTAGTTATCCTCACGAGTCTTGGTCACCACACTGA
AATAATCCTCACTCCAGAGTTCATAACCACCTTGACTTAAGGCAAAGTCT
TAGTTGTCTCAAAACTGAAAGCAGAGGCTCTATCGCGGAAAGAACCAGGC
AGTGTGCCAAAAAGGAAGCGCTGTGTGAGGTACCAAGGGTCCAAGGCATC
TCAGACTGCTTCACAGACCATGACCCAGGAAGGCCTAGACACTTCTAGAA
ACAAATGGCGGTTACAGTCCAAAGGCCTGGGCATTGATCGGCCTCAATTC
CAGCTCCGACTGCCATTAGTCTATCGTGTGAATAAGTTACTTTAAATCTC
GATGCCTCCTCTAGTTCCCTGTCTTAATACACGGGGAAACATAACATTTA
CATTGTAAACGGACTTTTCAACTTAAGAAGCTCTAAAGGTCCTCACAATT
GCAATAAGCCTCCTACCAGAAAACCTTATTTATTTTTTTTAACCCGG
AATTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCT
ATACAGAGAAACCCTGTCTTGAAAAACAAACAAACAAACAAAATAAAAAC
AGGAGAAAAAAAAAAGAAAAGAAAAAAAAAAAACGACTAACGTGACTGTA
AAGAGAGGTAGTCTTATACCTTTACGAATAGTTTGATTTTTAAGTGGAGA
CCCCCTTGCCTAGAAGAGACTCTTCTACTATCCCAAGCTTTGCAGTTTAC
TTTGTTTGTTACGATGATTTTTACAATTACTTTTTTTCCCGCTTTTCCTT
TCTCTTTTCTCTCCCTCTTCATTCCTTTCATCACCTTTATCGTCTTTCCT
TTTTTCTTTTTCCCCCCTTTTCTTTCCTTTTTATTCCTCTTATTCTCCCC
TTTTCCTTTCCCCCCCTTTTTTATCACCACTTCTTTTCCCTTTTTTTTCT
CCTCCTTTCTTTCCTTTATCCTCCCTCTTTACCCTTTTATTTTCCCCTTA
CCCTCTCCCCTTCTTTCCCTTTTTTCCCCTCCCCTTCCCCCTTTTCCTCC
TTTTATCTTCTTTCCATTTCATTCTTGCTTCCTTTTCCCCGCCCTGCTTG
TATATCCTTCCTTTTAGTTTTCCACATTTCCCCATTCTTTCTTATTTTTT
CTTTTTCTCTCCTTATTATTTTTTTCCTTTCCTTTCCCTTTGCCGCTCCT
CGATTTACCCTTTAGCCTATTCCCCCGCTTTCCTTGCGTTCCTACACCTT
TTCCGCCTTTTTTATTCCTTTCTTTTTCTTTTTCCCCCTTTATTTCCCTT
CCTTTTTTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_b04.b1 MSMg01no395_b04.b1 CHROMAT_FILE:
MSMg01no395_b04.b1 PHD_FILE: MSMg01no395_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:47 2005
         (520 letters)



>mm_chr2_121974109_121975028
          Length = 920

 Score =  998 bits (516), Expect = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttttgtccccataaatttaaattagcataaaccacatttttccttgcatttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gaattctttttgtccccataaatttaaattagcataaaccacatttttccttgcatttga 661

                                                                       
Query: 65  ggttttggaaacaagaacatgctaaatgccacaggttcatcatgcctggaattctctgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ggttttggaaacaagaacatgctaaatgccacaggttcatcatgcctggaattctctgga 601

                                                                       
Query: 125 caagaaccatcccttccacaattaagtccagtgttgggtcaggtttaaatctggtctctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 caagaaccatcccttccacaattaagtccagtgttgggtcaggtttaaatctggtctctg 541

                                                                       
Query: 185 ccatatttctacctccacgactttggtagttactagttatcctcacgagtcttggtcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ccatatttctacctccacgactttggtagttactagttatcctcacgagtcttggtcacc 481

                                                                       
Query: 245 acactgaaataatcctcactccagagttcataaccaccttgacttaaggcaaagtcttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acactgaaataatcctcactccagagttcataaccaccttgacttaaggcaaagtcttag 421

                                                                       
Query: 305 ttgtctcaaaactgaaagcagaggctctatcgcggaaagaaccaggcagtgtgccaaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttgtctcaaaactgaaagcagaggctctatcgcggaaagaaccaggcagtgtgccaaaaa 361

                                                                       
Query: 365 ggaagcgctgtgtgaggtaccaagggtccaaggcatctcagactgcttcacagaccatga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggaagcgctgtgtgaggtaccaagggtccaaggcatctcagactgcttcacagaccatga 301

                                                                       
Query: 425 cccaggaaggcctagacacttctagaaacaaatggcggttacagtccaaaggcctgggca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cccaggaaggcctagacacttctagaaacaaatggcggttacagtccaaaggcctgggca 241

                                               
Query: 485 ttgatcggcctcaattccagctccgactgccattag 520
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttgatcggcctcaattccagctccgactgccattag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)