BAC Information

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BAC

Clone NameMSMg01-395H03
Chromosome2 (Build37)
Map Location 138,647,012 - 138,647,298
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395H03.T7 (MSMg01no395_h03.b1)MSMg01-395H03.TJ (MSMg01no395_h03.g1)
ACCAG496261AG496262
length777805
length of high quality
(start - end)
373 (77 - 449)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no395_h03.b1 PHD_FILE: MSMg01no395_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:18 2005CHROMAT_FILE: MSMg01no395_h03.g1 PHD_FILE: MSMg01no395_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATAAATTTGTGGCGCTAAATGACTCACTATTTCCAGAGGATCCGCGG
AATTCTCTTCTTTCTACTTGGAATAAAACACATTTCTCAACCTTTCATCC
CTCCCAACCTGAGCAGCCACTCATGCACGACATTTGAATCTTACTTCTTC
TTTTTTAAAATTGAATTTTATTTGTAATTCATTTTTTTTTACATTCCATA
TTCCATTCCCCACCCCATCCATCCTCCAACTGCTCTACATCCCACAGCTC
CTCCCCACACAGTCTCCACAAGGATGCCCCCACCCTCCACCTCATCTGAC
CTCTAAACTCCCTGAGGCATCCAGTCTCTTGATGGTTAGGTGCATCATTT
CTGAATGGACACAGACCCTGCTGTTCTCTATTCTATGTGTGTTGGGGGCC
TCATACCAGTTGGTGTATGTTGTCTGTTTTGTGGCCCAGTGTTTAAAGGT
CACAGGGGTCCAGATTAATTAAGACTGCTGGTTCCTCTTATAGAATCACC
CTTCTCATCAGCTTCTTTCAGGTTTCCCTAATTCAGCAACAGGAGTTAGC
TGTTTCTGTCCATTGGTTGAGTGCTAATATCTATATTTGATTCTTTTAGC
TGCCCGCTTGTTCTTTTGGAAGGAAATTTTGATCACACCCTTTTTTTTTT
ATTAATGCTCTAAAATATCAGAAAAAATGGCCCGGTCTTGATCATTTTTT
CCCCCGAACGGTCTTTTTTTTTTTTTCACCAGATTTGTTTCCTTTCCTTT
CTTATATGATCTTTTTTCTCTTTCCAA
CCGATGCAGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGAATTTAGAGATCACATAAGCTT
TCTTTTTTGCTTTGTGACAGTGTCTCTCTATGTAGCCCTTGCTATCTGGG
AACTCTCTCTGATAGACCAGCTTGACTCATACTCAGAGAGATCCTCCTGC
CTCTGCTTCCTGAGTGCTGGAATTAAAGGTGCATTCCACTACAGAAAGCT
CTTAAGCCAAAGTGGAGAGGGTATGCTAATGGGGAAGGAAAAGCCGAAGG
GGGATCTTTAGAACCTGATCAGGCATGAAGGGGAAGGTGTTTTGTGCTCC
AAGATCCTAGACAAGAGAGAGGCTACTTTCTCCCATGGCTTCAGCGATAG
CATACATAGGCAATCACGCTCTTATTATCATCTATTGTGACTGCGACGAG
ATTAAGATTCGCTTTGTCCTCTCACAAAGATAGTACCACACCCCCTGTTT
CCAACATATTCGTTGGACTTTGGTTTGCTTCCCTCCCATTGCCTCTTCCC
TTCCCGTTTTTGCCCACTTATCCTCCCCATTCCTTTCTTCCAAATATCTT
TTGCCTTCGTCCTTCTTTTTATTTCTTTCTCCCCTTACCGCCCGCCTACT
CTAGTTCTTTATTTTTCTCCCCTTTTTCTCTTTCCTTCTTCATTTTCTTT
CCTACTTTCCCGTACCTCAACCCACTTTTTTTCTCTTTCTCCTTTATTCT
AATTTTCCCTCTATCCTCCCTATTCCTCTTATAATATCATCCTCTATCTC
CCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_h03.g1 MSMg01no395_h03.g1 CHROMAT_FILE:
MSMg01no395_h03.g1 PHD_FILE: MSMg01no395_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:18 2005
         (288 letters)



>mm_chr2_138646644_138647331
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaatttagagatcacataagctttcttttttgctttgtgacagtgtctctctatgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cttgaatttagagatcacataagctttcttttttgctttgtgacagtgtctctctatgta 596

                                                                       
Query: 61  gcccttgctatctgggaactctctctgatagaccagcttgactcatactcagagagatcc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gcacttgctatctgggaactctctctgatagaccagcttgactcatactcagagagatcc 536

                                                                       
Query: 121 tcctgcctctgcttcctgagtgctggaattaaaggtgcattccactacagaaagctctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcctgcctctgcttcctgagtgctggaattaaaggtgcattccactacagaaagctctta 476

                                                                       
Query: 181 agccaaagtggagagggtatgctaatggggaaggaaaagccgaagggggatctttagaac 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 475 agccaaagtggagagggtatgctaatggggaaggaaaagccgaaggtggatctttagaac 416

                                                          
Query: 241 ctgatcaggcatgaaggggaaggtgttttgtgctccaagatcctaga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctgatcaggcatgaaggggaaggtgttttgtgctccaagatcctaga 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)