BAC Information

Click to search

BAC

Clone NameMSMg01-395H06
Chromosome2 (Build37)
Map Location 94,209,283 - 94,209,746
singlet/doubletsinglet
Overlap geneTtc17
Upstream geneLOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik
Downstream geneItpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395H06.T7 (MSMg01no395_h06.b1)MSMg01-395H06.TJ (MSMg01no395_h06.g1)
ACCAG496267AG496268
length773789
length of high quality
(start - end)
466 (49 - 514)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no395_h06.b1 PHD_FILE: MSMg01no395_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:18 2005CHROMAT_FILE: MSMg01no395_h06.g1 PHD_FILE: MSMg01no395_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTAATTTCCCATTTAATTAACTATTAATGAGTGTTTCTCTG
TGTAGCTCTAAGAAAAGAGGCATAAGATTAAAACTGAGTGGCATAGCACT
AAGAAAAAGCATCCTGTTGCTGCATGACTTTGCTAATCATTTGTGTAACT
TTTTCTTGCCCCAGGAAATCATCAGATATGCCGGCTGGTCAACCAGCAGC
ATAGCTTGCACTGCCAATGGGACCAACCTGTGCGCTACCATCGAGGAGAT
ATCTTTGAAAATGTGGACTATGTTCAGGTCTCTTCTAGTTCTTACTGTCA
CTCGTGTGTCAATAATTTCATGCTTTATTCCTTTGACTTCTTGTAAATTG
AATTGCTAAAGTGTGTGACTATTATTGCTTTTAAGATTTTTATTGTCTGT
TGTGTGTATGCTAGCAGATGTTGTTATCAATGATCAGTTGCATGAATAGC
AATTCGTTTCCCAAAGTACTAGCACTGTGTCTACACACACGTACCTTTGA
TTCTTTTCCCCATTGCTATGTGAGCCAAAACTGACCTGTTACTACTAATT
AAATCACTTTAAAATAATTCTTTTAAACCTTTCCAAGGCCCCAACCCCCT
TAAAAACTTCCCCACCCCCCCGGTTAACCCCTACAATAATTTTATTCTTA
CCTCCTACCATAAATATTTTGCCCTGGTTTTTTTTCTTATATAAAAAACC
CTTTCTCTTTCTCTTCCCCCCCC
CTTCCGATGAAANTGGGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTACGAAGAAATCTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGA
TCAGTCTGGCGGTTCCTCATATTTCTGGATATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
ATCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGAT
GTGGTACATCTACTCAATGGAGTACTACTTAGCTATCAATAAGAATGAAT
TTATGAATTTCCCGGCCAAATGCTAGGACCCGCCAGGGTTCTTTCCTGAG
GGAGGGCAAACCTCTCTTAATAGGAATTCCTTCCACATAGGCTTCCCTGA
AATAACTTGCATTATTTCCCCAAACTTTCCAATATCCCTAATTCAAACTA
TACCATTCTTCCTTATCCTTTTCACCCTTTTTTCTTCCATTGTTTTTTTC
TTTTCCCCTTTTTTTTTCCCCTCCCCCCCTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_h06.b1 MSMg01no395_h06.b1 CHROMAT_FILE:
MSMg01no395_h06.b1 PHD_FILE: MSMg01no395_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:18 2005
         (466 letters)



>mm_chr2_94209063_94209928
          Length = 866

 Score =  859 bits (444), Expect = 0.0
 Identities = 459/466 (98%), Gaps = 5/466 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttaat---ttcccatttaattaactattaatgagtgtttctctgtgtagctc 60
           |||||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggaattctttaatgagtt--catttaattaactattaatgagtgtttctctgtgtagctc 627

                                                                       
Query: 61  taagaaaagaggcataagattaaaactgagtggcatagcactaagaaaaagcatcctgtt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 626 taagaaaagaggcataagattaaaactgagtggcataacactaagaaaaagcatcctgtt 567

                                                                       
Query: 121 gctgcatgactttgctaatcatttgtgtaactttttcttgccccaggaaatcatcagata 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 566 gctgcatgactttgctaatcatttgtataactttttcttgccccaggaaatcatcagata 507

                                                                       
Query: 181 tgccggctggtcaaccagcagcatagcttgcactgccaatgggaccaacctgtgcgctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgccggctggtcaaccagcagcatagcttgcactgccaatgggaccaacctgtgcgctac 447

                                                                       
Query: 241 catcgaggagatatctttgaaaatgtggactatgttcaggtctcttctagttcttactgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catcgaggagatatctttgaaaatgtggactatgttcaggtctcttctagttcttactgt 387

                                                                       
Query: 301 cactcgtgtgtcaataatttcatgctttattcctttgacttcttgtaaattgaattgcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cactcgtgtgtcaataatttcatgctttattcctttgacttcttgtaaattgaattgcta 327

                                                                       
Query: 361 aagtgtgtgactattattgcttttaagatttttattgtctgttgtgtgtatgctagcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagtgtgtgactattattgcttttaagatttttattgtctgttgtgtgtatgctagcaga 267

                                                         
Query: 421 tgttgttatcaatgatcagttgcatgaatagcaattcgtttcccaa 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgttgttatcaatgatcagttgcatgaatagcaattcgtttcccaa 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)