Query= MSMg01no395_k14.b1 MSMg01no395_k14.b1 CHROMAT_FILE:
MSMg01no395_k14.b1 PHD_FILE: MSMg01no395_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:34 2005
(519 letters)
>mm_chr2_153562365_153563283
Length = 919
Score = 901 bits (466), Expect = 0.0
Identities = 509/534 (95%), Gaps = 19/534 (3%)
Strand = Plus / Plus
Query: 4 ggaattctcattttc-cttattttctggccttttctgataaaaaatgtaatgagatgaag 62
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggaattctcattttcacttattttctggccttttctgataaaaaatgtaatgagatgaag 246
Query: 63 atgatctccatgtgttagttacttctcttgtcactgtgagcaagtgtgtcaggtgtgtgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgatctccatgtgttagttacttctcttgtcactgtgagcaagtgtgtcaggtgtgtgg 306
Query: 123 ggacagcatggtgacaggcctccctgcagtgctgcgagtgtgaggcagtgcatttacatc 182
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggacagcatggtgacaggcctctctgcagtgctgcgagtgtgaggcagtgcatttacatc 366
Query: 183 ccagtggcagaggaaacagagaaagggtaatgccagtgctcaggtggctttcttccttcc 242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 367 ccagtggcagaggaaacagagaaagggtaatgccagcgctcaggtggctttcttccttcc 426
Query: 243 ccctttttcggttcagtccaagaccccattttatggcaaggtccctacca---------- 292
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 427 ccctttttcggttcagtccaagaccccaggctatggcaaggtccctaccacgctcagttc 486
Query: 293 -------tgctcagcatgggtcttccttcctcacttaaacctcttggaaaatgtcccgcc 345
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 487 atgctcatgctcagcatgggtcttccttcctcacttaaacctcttggaaaatgtct-gcc 545
Query: 346 ctcacagtcatgactagactctaaagatgatcaaattgtcactacaaattaccggtggga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ctcacagtcatgactagactctaaagatgatcaaattgtcactacaaattaccggtggga 605
Query: 406 ttaatcaggccacgagctcctctctcttctctatccgagctgtcatggagtctaggtgag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttaatcaggccacgagctcctctctcttctctatccgagctgtcatggagtctaggtgag 665
Query: 466 gtttattttacaagctctgactcaggcacctcccgagactccctgtgcttctag 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gtttattttacaagctctgactcaggcacctcccgagactccctgtgcttctag 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_k14.g1 MSMg01no395_k14.g1 CHROMAT_FILE:
MSMg01no395_k14.g1 PHD_FILE: MSMg01no395_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:34 2005
(473 letters)
>mm_chr2_153756823_153757695
Length = 873
Score = 810 bits (419), Expect = 0.0
Identities = 463/489 (94%), Gaps = 20/489 (4%)
Strand = Plus / Minus
Query: 1 agcttcttgttagcaaattcctactta------------ccccaaaaaagacaaaacccc 48
||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 712 agcttcttgttagcaaattcctacttaccccatcataccccccaaaaaagacaaaacccc 653
Query: 49 tcttttctatgtcaggtttgtgactcccctttagccacaccacctagaggcatcccgtgc 108
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tcttttctatatcaggtttgtgactcccctttagccacaccacctagaggcatcccgtgc 593
Query: 109 catctctggttgatagagctatttcccacttgactgtgggcgcttaagcagaatccaggg 168
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 592 catctctggttgatagagctatttcccacttgactgtgggagcttaagcagaatccaggg 533
Query: 169 gaggttaactctgggggccctaaggagagcatgatggtgctggtcattgctgcattaacg 228
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aaggttaactctgggggtcctgaggagagcatgatggtgctggtcattgctgcattaacg 473
Query: 229 gaaatcctgg----tttttctttggcctcagtattcttatccgagtaagggatcgaggag 284
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaaatcctggcagc----tctttggcctcagtattcttatccgagtaagggatcgaggag 417
Query: 285 caaatcggactccagctcagctgtaccgttgagcctctgcatgtaggcagcccggaccac 344
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caaattggactccagctcagctgtaccgttgagcctctgcatgtaggcagcccggaccac 357
Query: 345 atcactgagccattcttccagacgggatgcctgcaacagcagatggaatagtgagtgggg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atcactgagccattcttccagacgggatgcctgcaacagcagatggaatagtgagtgggg 297
Query: 405 agcttcgtgagaaaccagaggcccagaagcctcctgcaagcctaaatgaactgttcctgc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 agcttcgtgagaaaccagaggcccagaagcctcctgcaagcctaaatgaactgttcctgc 237
Query: 465 taggtaatg 473
|||||||||
Sbjct: 236 taggtaatg 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
