BAC Information

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BAC

Clone NameMSMg01-395N07
Chromosome2 (Build37)
Map Location 58,888,079 - 58,888,423
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
Downstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395N07.T7 (MSMg01no395_n07.b1)MSMg01-395N07.TJ (MSMg01no395_n07.g1)
ACCAG496552AG496553
length784782
length of high quality
(start - end)
346 (74 - 419)338 (79 - 416)
definitionCHROMAT_FILE: MSMg01no395_n07.b1 PHD_FILE: MSMg01no395_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:47 2005CHROMAT_FILE: MSMg01no395_n07.g1 PHD_FILE: MSMg01no395_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGACATCCCACTACACTGGGCTTTCATTATACTTCACCCA
ACAAGCTTCTAGAAAGTTCCACCAAGTATATTTCCTATCTGTTCTCAGCT
GAGTGTTATTTCACATACTCTTGTCATTACAATGGCAACATTATTATTAT
TATTATTTTGTAAATCCCTTGAGTGTTTTATATAATAAACAGTAATAGTA
GCTAATGTATTCATATTTATAATGACAGACACTATTCTAGTGCTTTCTGT
ATATGTAATAGGCAGAATTCTAATATTTACCTCCCTGAGAATATCCACCC
ACAGTATACACCCTATGAAACATGCAGGAGTGTAAATATTCTGCGCTGTC
TCTCCACTGCTATCTGATGTTGCCAAAGAGACTTGGACACGTAATTAAAG
TCTCTGATAGTCGGCAGATAAGATAAAGTGGTCTGACCTTATGGCAAGAA
CAGTTTCTAAGTTTGGGGGCTAGAGAAGATATGGAGGGATTCTAACTATG
ACCAGGAATGTCTGAAAACAATCCCTTTGCCGCGTTGTACTGAAAGTGTT
CTCATACACATGCTCAATATATATATGAACTCATTGTCTCTCACCGGCCC
CTGTCTTTTAATATTGACCCCTTAAATTTATCTCCATATTACTCCCTTAT
TTGATTTTCCCCCCAATGCTCCCTTCTTATATTTTTTTCTCTTTCTTTCC
TCCCCCTTCTTTTTTTCATTTTTTTCTTCTTTCC
NNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTTATCATTAATATTTGA
GAATTCCTTATAAATAATGTATCTGAGTCTTTAATTAGACACTAAGTATA
CAAATATATTCTTTTGTTGATTGGCCTGACATTTTAGCCTCTTGTTTATG
TCTTTTAATAATTTTGAGGATATCTAATAAATCATTTTTTTCTCTTAGAA
ATAATACATTTGGTGTCATGTCTAAGGTATCTTTCTCTGACTCAAGATTG
TAAGAAACTCCTCCCATGTTGTTTTTACATGTAGGTCTATGATCCTTGAG
TCATGTTTTGTAAAGAGCATGTGGTATGAATTGAGGGTCATTTATTTGTG
ACGTGGAAAGTCACTGGCTCACAACAATTGTCCACTTGGGATTTATTAAC
TTTGTGTCTTTGCTAGAAATCAACAAACCTACGCTGTCTGGCTTTGTTTC
TGGATACCTTGGTCTATTCCATCATACACACTTAGGATTCTCTTTTAGCG
GCCACGTTTTCATGTTTTTTTACCAGTATTTTTTAAACCCTGATTTTCCA
CCTCCAGGTGGGGAATTCCCCCCCCCCTTAAAAACCCGAAACTGGGGATT
ATGGTTGACCTTATGTTTTTATTGGGCCCAGCCCTCCCGGGGAATAAAAC
ACCATATTTTCTTTATCACACTACCTTTTTTTTTTAAAAATCCTTTTGAG
AATATGTGATTTATTTGCCCTCCGAATATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_n07.b1 MSMg01no395_n07.b1 CHROMAT_FILE:
MSMg01no395_n07.b1 PHD_FILE: MSMg01no395_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:47 2005
         (346 letters)



>mm_chr2_58887879_58888623
          Length = 745

 Score =  615 bits (318), Expect = e-180
 Identities = 339/348 (97%), Gaps = 5/348 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactgggctttcattatacttcacccaacaagcttctagaaagttccaccaagtatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cactgggctttcattatacttcacccaacaagcttctagaaagttccaccaagtatattt 486

                                                                       
Query: 61  cctatctgttctcagctgagtgttatttcacatactcttgtcattacaatggcaacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 485 cctatctgttctcagctgagtgttatttcacatactcttgtcattacaatgacaacatta 426

                                                                       
Query: 121 ttattattattattttgtaaatcccttgagtgttttatataataaacagtaatagtagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttattattattattttgtaaatcccttgagtgttttatataataaacagtaatagtagct 366

                                                                       
Query: 181 aatgtattcatatttataatgacagacactattctagtgctttctgtatatgtaataggc 240
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 365 aatgtattcatatttataatgacagacactattctagtgctttctatatacgtaataggc 306

                                                                       
Query: 241 agaattctaatattt--acctccctgagaatatccacccacagtatacaccctatgaaac 298
           |||||||||| |     |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agaattctaaga---ggacctccctgagaatatccacccacagtatacaccctatgaaac 249

                                                           
Query: 299 atgcaggagtgtaaatattctgcgctgtctctccactgctatctgatg 346
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atgcaggagtgtaaatattctgcgctgtctctccactgctatctgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space:   248032
Effective search space used:   248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)