BAC Information

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BAC

Clone NameMSMg01-396A10
Chromosome2 (Build37)
Map Location 153,021,639 - 153,021,906
singlet/doubletsinglet
Overlap geneTm9sf4
Upstream geneCsnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck
Downstream geneTspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396A10.T7 (MSMg01no396_a10.b1)MSMg01-396A10.TJ (MSMg01no396_a10.g1)
ACCAG496702AG496703
length764761
length of high quality
(start - end)
272 (33 - 304)319 (65 - 383)
definitionCHROMAT_FILE: MSMg01no396_a10.b1 PHD_FILE: MSMg01no396_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:03 2005CHROMAT_FILE: MSMg01no396_a10.g1 PHD_FILE: MSMg01no396_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACGACTCACTATTTTTCACAACACCGCGGAATTCCTCCTCTT
CCCCTCTGACTGAAACTTACAGTCTGGGCACCACATCTAACACTGTGAAC
AGAAAGAAGAAAAGGTCCCTGGGAGAACCCCAGCCTGCACTGCCCCATTT
CTGTGGACTTTTCCACCTCCACGTGTCTTCACTCTGGCGACTGCCGTGTC
AGCTGGCTGTCACACAGCCTGGCAGCCAATTCTCTCTAGTCTGTTGGGTG
TGCTGTTCTCCTGGGATGCGCTCACCACTCTGAATCCACTAGTCTCTTGC
TCCATTCATTTTTACAATGCAAGCAAAAAGTTGCCCAAGTTCAACCTCTG
TATCACTTTGTGGATGGAGCATCTGCAATGCTGAGATACTTTTGGAAGCT
TAACAGAGCCTAGAACCGGAGAGACTGTGGGCCCTAGCCCCCACTGCTCC
ACCATCACGTTGTTTAGCTACTAGCTTAAAAATCCATATCATGGCCTACC
TAAGCTCCTGACTGCTGTATGATACCTGTCTCAGGCCCCAACTAATGCTA
GGAAAAGGAGGAGGAGGAGAAGGAACAATATTATTATGAATAACAGCCCC
ATACTCTTTTCTCTTCATCACCCTCATATATAACCACCCATTATTTTATA
TTTTTTTTTTATTTAATCCACATCATCATCAACACACTCTCCCATATTAT
ACACCCTTCTTTTATCAATTATTAATAATACTATATCTCCTCTATACAAT
TTCTTTAAAATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGAGGACTTTTGAGAAGGTGAAACATTGCTAGGGCC
ATGAGAGGCAGGGTTGTTGGTCACAGTTTTTTAAGTAGACATATGCAAAG
AAATAACAAGAAGAAATTAGATATCCTGAAGATGAAGATCAAACTTGCCC
CAAGGACTCAATGCCCCTAATCAGCAGGAAGTGGTCTAATGAGAACGCTG
CCCCCTTTCCAACCCCAGACTTTATTCAGGGAGCGTTTTCCTTTCCCCTC
TATCCCTTTTTCTCTCTTATCAAATGTTAGGGGGTTGAAAAGGTGGAAGA
AAAGGGGTGAAAGGTGGAAGAGAGAAGAACCCATATAATAGCTTAAGGAC
CAGCTACTTACAAATCAACCAACCAACCAAAGTTGTTTCCAGTGCTATGG
AGCATCACGAGGATAGGTTCCTTATGGCAATGCGACATCGCGGATATGAC
TTCCAGTTGAGACCCTGATGATTGCGATTATATGTCCCCCACCCCCATGC
GTTACTTCACATTATGTTATTTTTCACCGTTTCCTCCGTAAGTTCTGTTT
AGAGTTTATCTTTATCTTTTGCTCATATCCCTTTTCACTCCGTTTCCCCC
TCCTTTCCCTTATCATCCCCCCTTTTTCCCCTTTACTCGCATCCTCATTC
CTAATTACATTATCTCCCCTCCCCCCATTCTTCCCACCTCCTCTTTACTC
TTTTTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_a10.b1 MSMg01no396_a10.b1 CHROMAT_FILE:
MSMg01no396_a10.b1 PHD_FILE: MSMg01no396_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:03 2005
         (272 letters)



>mm_chr2_153021435_153022106
          Length = 672

 Score =  503 bits (260), Expect = e-147
 Identities = 266/268 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcctcttcccctctgactgaaacttacagtctgggcaccacatctaacactgt 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattcctcctcttcctttctgactgaaacttacagtctgggcaccacatctaacactgt 413

                                                                       
Query: 65  gaacagaaagaagaaaaggtccctgggagaaccccagcctgcactgccccatttctgtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaacagaaagaagaaaaggtccctgggagaaccccagcctgcactgccccatttctgtgg 353

                                                                       
Query: 125 acttttccacctccacgtgtcttcactctggcgactgccgtgtcagctggctgtcacaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acttttccacctccacgtgtcttcactctggcgactgccgtgtcagctggctgtcacaca 293

                                                                       
Query: 185 gcctggcagccaattctctctagtctgttgggtgtgctgttctcctgggatgcgctcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gcctggcagccaattctctctagtctgttgggtgtgctgttctcctgggatgcgctcacc 233

                                       
Query: 245 actctgaatccactagtctcttgctcca 272
           ||||||||||||||||||||||||||||
Sbjct: 232 actctgaatccactagtctcttgctcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)