BAC Information

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BAC

Clone NameMSMg01-396D06
Chromosome2 (Build37)
Map Location 107,622,295 - 107,622,723
singlet/doubletsinglet
Overlap genenone
Upstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790, LOC623003
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396D06.T7 (MSMg01no396_d06.b1)MSMg01-396D06.TJ (MSMg01no396_d06.g1)
ACCAG496838AG496839
length743744
length of high quality
(start - end)
427 (63 - 489)408 (69 - 476)
definitionCHROMAT_FILE: MSMg01no396_d06.b1 PHD_FILE: MSMg01no396_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:17 2005CHROMAT_FILE: MSMg01no396_d06.g1 PHD_FILE: MSMg01no396_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
GCATGCTTTCCTTAATTTTGTTTCAAGGTGAAGTGTGATTGCATATAGGG
GACTAGGTCTGCTGTGTGAGAATTGGTATAGCAGCTGTTGCTTTTTAGGA
ATGAATATGAAGGAGATAAATGCATTTTCTATGAGGAACATGGAAGCAAA
GTCCAAGGAGAAACACTGAGAGTAGAACTCAGTTTGGGGCAAGGAATGAG
GGACTAAGAGCTTTAAAGTTTATAACTTATTTACCATATCTGCTGACTGA
AATGTAAAGTTATATTCATTTTACTGGATGCAGCATAGAACAAAGCAAAT
TTTAATATGTAAAGTAATAATGACAAAATACTAAAAATGGAAAGCAGGAT
AATAAGTAGTAAATGAGATAAGTATTTAAATATACACAGTGTATAGAAAA
CAGCTTTATCAAACCCTCCTGTGTTTAAAAAAAATGAATGCCATCACACA
TGTTCTTACAAACCTTCTTTATAAATGGACTGCTAGTACATTCTATTCTT
TTTATTTATTTTCCTGTGACGTAAGACAATTACTGCCTATAGAGATAATT
CACTTGCTCACTTTTTCGAAAGCCATTTAATTTGCTAGCCAATGTACCGA
CCCTGAACCAATTTGCCGGGTCCACAAATTTGAAAAAGTCCCCTCGAAAT
TTTTTCCTTATTTTTTGGGAAGGCTGGGTCTTTTCTTTCTTCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCCGCTATTANAAAGAATGAATTTATGAA
ATTCCTAGTCCAATGTAAGGACCTGCAAGGCATCATCCCTGAGTGAGGTA
CCACCTTCTCCCAAGAAACTTCCCCAATATTGTATTCCCTGAAAAGTGGA
AATTAACCCTCCCAACCAAGTTACCCTAGAATTTTAAAAATAATTTGGTT
AACCCCTGCTTTCTCCCTAATAACTGCCAATCTCGCTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_d06.b1 MSMg01no396_d06.b1 CHROMAT_FILE:
MSMg01no396_d06.b1 PHD_FILE: MSMg01no396_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:17 2005
         (427 letters)



>mm_chr2_107622095_107622923
          Length = 829

 Score =  810 bits (419), Expect = 0.0
 Identities = 426/429 (99%), Gaps = 2/429 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taattttgtttcaaggtgaagtgtgattgcatataggggactaggtctgctgtgtgagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taattttgtttcaaggtgaagtgtgattgcatataggggactaggtctgctgtgtgagaa 260

                                                                       
Query: 61  ttggtatagcagctgttgctttttaggaatgaatatgaaggagataaatgcattttctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtatagcagctgttgctttttaggaatgaatatgaaggagataaatgcattttctat 320

                                                                       
Query: 121 gaggaacatggaagcaaagtccaaggagaaacactgagagtagaactcagtttggggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggaacatggaagcaaagtccaaggagaaacactgagagtagaactcagtttggggcaa 380

                                                                       
Query: 181 ggaatgagggactaagagctttaaagtttataacttatttaccatatctgctgactgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaatgagggactaagagctttaaagtttataacttatttaccatatctgctgactgaaa 440

                                                                       
Query: 241 tgtaaagttatattcattttactggatgcagcatagaacaaagcaaattttaatatgtaa 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaagttatattcattttactgaatgcagcatagaacaaagcaaattttaatatgtaa 500

                                                                       
Query: 301 agtaataatgacaaaatactaaaaatggaaagcaggataataagtagtaaatgagataag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaataatgacaaaatactaaaaatggaaagcaggataataagtagtaaatgagataag 560

                                                                       
Query: 361 tatttaaatatacacagtgtatagaaaacagctttatcaaaccctcctgtgttt--aaaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 561 tatttaaatatacacagtgtatagaaaacagctttatcaaaccctcctgtgttttaaaaa 620

                    
Query: 419 aaaatgaat 427
           |||||||||
Sbjct: 621 aaaatgaat 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 829
Length adjustment: 9
Effective length of query: 418
Effective length of database: 820
Effective search space:   342760
Effective search space used:   342760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)