BAC Information

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BAC

Clone NameMSMg01-396H16
Chromosome2 (Build37)
Map Location 109,426,418 - 109,426,878
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
Downstream geneBdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396H16.T7 (MSMg01no396_h16.b1)MSMg01-396H16.TJ (MSMg01no396_h16.g1)
ACCAG497047AG497048
length760749
length of high quality
(start - end)
423 (63 - 485)493 (63 - 555)
definitionCHROMAT_FILE: MSMg01no396_h16.b1 PHD_FILE: MSMg01no396_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:37 2005CHROMAT_FILE: MSMg01no396_h16.g1 PHD_FILE: MSMg01no396_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTGTCCCTATACGACTCACTATATCCAGAGGATCCGCGGAATTCTAAGAA
CTACCGACAAACAAATGAGCAATAACATTTCACTGGGTGTGGCACTGGGT
GTTTTTAACACTAGCACTTAAGAGAAAGACAGAGGCAGGCAAATCCGGAT
TTGACACCAGCCTGGTCTACATCTTGAGTTCTAGTCCAGCCAAGAATATA
TATTAAGTCTTTGTTGCAGGATTTCCCTGTCCAATCACATTAGGGCAGTG
GGAGGCTTGTGATTGAACGAACAGGAGAAGGGAGGCGGAGCGAGGAGCTG
AGGAGCCAGATAGAGGTCTGAAGAGGAGAGGGAGAACCAGAATGGAGGCT
GATGTGGTGTTATCAAAAGGTTAGAATAATTGTGTTAAAGCTTTATCTTT
ATCATTTTGGCTCTGAAATTATTGTACTGGCATCTTGTAAATTGTGTTAT
TACTGATACATAAATCTGATTGGCTAATTAAGCATTAAGAGTCTTGATTC
TATCGGGTAATTAGGTGTTGAGACTGCTAACCAGGGGCGTGTGGGATATA
GAGTGAAAGTGACAGTACCTTGGATGCCCCCCGTTCACTTAACTTTTCCC
CTTCCCCTTTCCCTTCCTTTTCTCTTATACTTCCCTTTTTCTTTTCCCTT
TCTTACTATCCCTTCCCTTTTTTTACCCCTTTCCCCTTCCCTTTCCTCCC
TTTATATATTCCCCACATTTTTTTCTCGTTTTTTATCTCATCCCTTTCCC
TACCACTTCC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGACATAATTGTTGTTGTTTTTTTTTTTTCCTTTCTGG
ATACTTGTGCTATGATGTTCTGAGCAGGAAGGGAAAAGTTGACAGAAAGT
TGCTAAGCAAAAATGAACCAGTCCTGGAATCTTTAGAAAATTCTTATTCT
CCTCTAGATTGTAAAAGATGCTAAAATCAGGAGATTCTCCTTTAGGAAAG
AATGCTCTGGAGGAAATTCCAGAGCATGGCTAGACAATTGTTTTGCTAAT
ACTAAAATATCATCTTGGAGATGATTGGGAAAGACTTTTGCAGATATTTC
TTTTTTTTTTGACCTCTAATCTATAAATTCACCTTTTATTATATAAAGTT
GCATGCTTTGACAAGTTTAGTGCAACGTATTTCATGAAACATTTTAAGTA
TGTTGACTAAAGCCCAGGTTGAGTACAGTGCCCAAACTTAAACTTTATGA
AACATTAGATTTTTGATGTCTAAGGGCAGAAAAACCCACATAGAAAAACA
GAATTCTGTGGTAGCAATGAGCATCTCCTTGGTGGACAGCGGATCACCTC
AGCTGTTGGCCGATTGAGGGCTGGGGAAATGGTTTACCAGTGTTTTGCTT
TTTTGCACCTTTTCTTCTATTGGCGAGGTCCCCTCTTATCCAAAAACGGG
GGAAATGAACTCCCACTGTATTTGTTTTTATAAGCTCTTTATGTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_h16.g1 MSMg01no396_h16.g1 CHROMAT_FILE:
MSMg01no396_h16.g1 PHD_FILE: MSMg01no396_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:37 2005
         (493 letters)



>mm_chr2_109425981_109426878
          Length = 898

 Score =  845 bits (437), Expect = 0.0
 Identities = 453/461 (98%), Gaps = 5/461 (1%)
 Strand = Plus / Minus

                                                                       
Query: 38  gatacttgtgctatgatgttctgagcaggaagggaaaagttgacagaaagttgctaagca 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gatacttgtgctatgatgttctgagcaggaagggaaaagttgacagaaagttgctaagca 839

                                                                       
Query: 98  aaaatgaaccagtcctggaatctttagaaaattcttattctcctctagattgtaaaagat 157
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaaatgaaccagccctggaatctttagaaaattcttattctcctctagattgtaaaagat 779

                                                                       
Query: 158 gctaaaatcaggagattctcctttaggaaagaatgctctggaggaaattccagagcatgg 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gctaaaatcaggagattctcctttaggaaagaatgctctggaggaaattccagagcatgg 719

                                                                       
Query: 218 ctagacaattgttttgctaatactaaaatatcatcttggagatgattgggaaagactttt 277
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 718 ctagacaattgttttgctaatactaaaagagcatcttggagatgattgggaaagactttt 659

                                                                       
Query: 278 gcagatatttc-----ttttttttttgacctctaatctataaattcaccttttattatat 332
           |||||||||||     ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gcagatatttctttttttttttttttgacctctaatctataaattcaccttttattatat 599

                                                                       
Query: 333 aaagttgcatgctttgacaagtttagtgcaacgtatttcatgaaacattttaagtatgtt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaagttgcatgctttgacaagtttagtgcaacgtatttcatgaaacattttaagtatgtt 539

                                                                       
Query: 393 gactaaagcccaggttgagtacagtgcccaaacttaaactttatgaaacattagattttt 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gactaaagcccaggttgagtacagtgcccaaacttaaactttatgaaacattagattttt 479

                                                    
Query: 453 gatgtctaagggcagaaaaacccacatagaaaaacagaatt 493
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gatgtctaagggcagaaaaacccacatagaaaaacagaatt 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 898
Length adjustment: 10
Effective length of query: 483
Effective length of database: 888
Effective search space:   428904
Effective search space used:   428904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)