Query= MSMg01no396_n03.b1 MSMg01no396_n03.b1 CHROMAT_FILE:
MSMg01no396_n03.b1 PHD_FILE: MSMg01no396_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:03 2005
(549 letters)
>mm_chr2_130852955_130853903
Length = 949
Score = 1009 bits (522), Expect = 0.0
Identities = 540/546 (98%)
Strand = Plus / Minus
Query: 4 ggaattccttatggattgacaagccctagtgcaacttccctttctttcttttggccaaga 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ggaattccttatggacggacaagccctagtgcaacttccctttctttcttttggccaaga 690
Query: 64 gtcccctggcttgttacggagatgaaaggctagaccacgcagatacttatgtgctgggtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtcccctggcttgttacggagatgaaaggctagaccacgcagatacttatgtgctgggtt 630
Query: 124 ttggtagagatgtggggagctcctgactgtataggggatgaggctgggatcatttctaga 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 629 ttggtagagatgtggggagctcctaactgtataggggatgaggctgggatcatttctaga 570
Query: 184 actttctgctctttaatagtgatgcaaagagtcgtgttttgagaggtgagccttctagca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 actttctgctctttaatagtgatgcaaagagtcgtgttttgagaggtgagccttctagca 510
Query: 244 gtgttttgtgcatcagtgatttatggttcagcttgtatctgtcactccacaagagtcttg 303
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 509 gtgttttgtgcatcagtgatttatggttcagcttggaactgtcactccacaagagtcttg 450
Query: 304 ggaggagtgggttagtgcagggcttagagaaaggctccctcttcaacactgcatttaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggaggagtgggttagtgcagggcttagagaaaggctccctcttcaacactgcatttaaag 390
Query: 364 gtgaaacactacagtttttgttcttctgattgttaacttctccaaactcatacatttgag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtgaaacactacagtttttgttcttctgattgttaacttctccaaactcatacatttgag 330
Query: 424 cactgttgcctagagggctattctagtcaggtgatagcagaactgtaggacatgaagaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cactgttgcctagagggctattctagtcaggtgatagcagaactgtaggacatgaagaag 270
Query: 484 gagaggacaggtgtgtgaggctgctgcataatgccagaatacggagcaccatatatgggg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 269 gagaggacaggtgtgtgaggctgctgcataatgccagaatacggagcaccataaatgggg 210
Query: 544 aaatgc 549
||||||
Sbjct: 209 aaatgc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_n03.g1 MSMg01no396_n03.g1 CHROMAT_FILE:
MSMg01no396_n03.g1 PHD_FILE: MSMg01no396_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:03 2005
(570 letters)
>mm_chr2_130718670_130719639
Length = 970
Score = 1067 bits (552), Expect = 0.0
Identities = 567/574 (98%), Gaps = 4/574 (0%)
Strand = Plus / Plus
Query: 1 cacatggtgacaaattgatgtcacttgtccatagcttatgagtgacacatgtgagcaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cacatggtgacaaattgatgtcacttgtccatagcttatgagtgacacatgtgagcaagt 256
Query: 61 caggacttcagatgactgtagctcagactgatattttgcctgcagtgcttggctagactg 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caggatttcagatgactgtagctcagactgatattttgcctgcagtgcttggctagactg 316
Query: 121 tctctgaaagtctaacccatatgaagtgttagacaatatatgtttattaccattttaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctctgaaagtctaacccatatgaagtgttagacaatatatgtttattaccattttaatt 376
Query: 181 agctgaaataagtgcaaggtcatttgtcaaaagacccaagtatataaattaattaattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agctgaaataagtgcaaggtcatttgtcaaaagacccaagtatataaattaattaattaa 436
Query: 241 gatcagttaaaaagcaggatgtgaagtttattttttctttcttcttcctttttttctttc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gatcatttaaaaagcaggatgtgaagtttattttttctttcttcttcctttttttctttc 496
Query: 301 ttcttctttttttttttt----cagagcaagagccagcacatggggccttgtatacaacc 356
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttctttttttttttttttttttcagagcaagagccagcacatggggccttgtatacaacc 556
Query: 357 tgcattgtgttctacagtgagctgtaacctttggttttcattcctcttgtgtttgctttg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgcattgtgttctacagtgagctgtaacctttggttttcattcctcttgtgtttgctttg 616
Query: 417 tatatgtttgaaattttttatgatacaaattgaatctaggatttctactgcataattacc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tatatgtttgaaattttttatgatacaaattgaatctaggatttctactgcataattacc 676
Query: 477 taaataacctccaggtagtttaagtttaagaatacccaataaatgatcatcttttataca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 taaataacctccaggtagtttaagtttaagaatacccaataaatgatcatcttttataca 736
Query: 537 tccagataggaaagggattctcattctggggatt 570
||||||||||||||||||||||||||||||||||
Sbjct: 737 tccagataggaaagggattctcattctggggatt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
