Query= MSMg01no397_d07.b1 MSMg01no397_d07.b1 CHROMAT_FILE:
MSMg01no397_d07.b1 PHD_FILE: MSMg01no397_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:33 2005
(243 letters)
>mm_chr2_83144197_83144840
Length = 644
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 2 cagatcattctagacataattttatgttcatacttttgtactgaatttatatctttgttt 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 202 cagatcattctagacataattttatgttcatatttttgtactgaatttatatctttgttt 261
Query: 62 aaaaaaaaa-ctgttgcctattgaaatagaccgtatatactccagatagagacaatctgg 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaaaaaaaactgttgcctattgaaatagaccgtatatactccagatagagacaatctgg 321
Query: 121 tttgatcttgatttccaaaggcaaagcaaaataaatatttttgaagcaaagatcttagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttgatcttgatttccaaaggcaaagcaaaataaatatttttgaagcaaagatcttagca 381
Query: 181 ttgtggctgcctagttcaaattcctccaatgatgactaaacagattcaggaacaggaaca 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 gtgtggctgcctagttcaaattcctccaacgatgactaaacagattcaggaacaggaaca 441
Query: 241 aaa 243
|||
Sbjct: 442 aaa 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space: 148590
Effective search space used: 148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no397_d07.g1 MSMg01no397_d07.g1 CHROMAT_FILE:
MSMg01no397_d07.g1 PHD_FILE: MSMg01no397_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:33 2005
(341 letters)
>mm_chr2_83328873_83329613
Length = 741
Score = 629 bits (325), Expect = 0.0
Identities = 337/341 (98%)
Strand = Plus / Minus
Query: 1 catactcagaaacgaatcagatgaattacaattaggaaaagtctaagaaggcttcatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 catactcagaaacgaatcagatgaattacaattaggaaaagtctaagaaggcttcatata 482
Query: 61 tcatttccaacaaccaatttaaatgtttcagccccaaataaaaatgctcaattacgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcatttccaacaaccaatttaaatgtttcagccccaaataaaaatgctcaattacgaaat 422
Query: 121 tttagacattcagtaagatgttagtgggagaaggtggtgggacatgcttgaaatcattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttagacattcagtaagatgttagtgggagaaggtggtgggacatgcttgaaatcattca 362
Query: 181 gacaaaccaattccttaagtaggcttgagagccctcttcatgtgacattgttaaattggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gacaaaccaattccttaagtaggcttgagagccctcttcatgtgacattgttaaattggg 302
Query: 241 gtgaaaaagcaattataagacaaacgtgtcttactcaagagcatgacttggggtaataca 300
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 301 gtgaaaaagcaattataagataaacgtgttttactcaagagtatgacttggggtaataca 242
Query: 301 acttactatgtcttattgtatttcttgtcaacactcctatt 341
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 acttactatgtcttattgtatttcttgccaacactcctatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
