TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCTTTCAATATTCTGTATTAAGCGTGTTAATTTTACAGTGAAAAATTAT
TTAAGAAAAATAAACATTTTAGAAAGTGTTTTGCCCCATTTTAAGGTTGC
TTCTGCTACACTCTGGCCTTGCTGAACATAGAGCAATTCTTAAGACACAG
ATAGATTCCTAGAACATTGAGGCTTGGCTTTCAGACCTGCCACTGCCTGG
TCTTGTGACTCTGCATAGTAAAAGCTCAAGATAACTCTGGAACAAGCAGT
GGATGTCAGCTGGATGCTGCTGCTGAGCCCAGAAGAGTACGTCACGGTGC
TCACATGCCAACAGGCATTGGCCACTCCTGTGACCAGATCCAGGCAAATC
AACACCACTGTCTTTTTTGTTGTTTTTTGGTGGCGGTGGTTTGTCTTCGT
TTCCCTTCTCGATCTTTCCCTCCGTTTTTTTTCTCTTTTTCCCTTCCTCT
CCCCCCCCCCCTTCCCATCTCATTCCCTTTTTTCCCCCTCTTCCTTATCT
CTTCTATTCCTCCCATCCCTTTCCCCCTCTTCTTTCCCTTTTCTCCTTCC
CCCCATCTTTTTTTCCTTCCCCTCCTTCCCCGTCTTTCCTTTTATTACCC
TTATCCCTCCCCTCTTTTTTCCCCCCCCTTCTTTTTTCCTCCTCTTCTTC
TCTCCATTTCCTTCTCTCCTTTATCTCTCCCCTACTCTTCTCCACTTCCT
CCTTTACTACCCTCTTTCTCTATCCTTTTATC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTACAGCAGTGCTTACAATTGGTA
AGAATAGTCCCTGTTATCCCAACAAATTAGAAGCAAGGGAAAGCTTCTAT
AAAAGTAAAAACTTTAAAAGCTATTGCATTCCATTAATAGAAGCAATATT
TTCCAGTGTTTATTATTGTTTTTATAGCTGGAGACATTCCATTTCAGAAA
AGGCAAGGAAAACAAGAGCCTATCTACTGCAATACCCACCAAATATGTAA
CTCTTTAACTATAAAATTTCCAGATTTTAATTTACTTAAAAGAATGAGTT
TATCAAATGGATTGTTTTTATTTTTATTTATTTCTTACTTCATTTTATGT
GTGTGTATAGGCGTCCTGATTGTTTGCTCTATTATTCCTTGCACGCCTGG
TGCCCTCACAGTTTCTCACCGCGTTTTTTTTTTCTTCTCCCCCCATCTTC
TCCACCTATTATCCTCCCCCCCGCCCCTCCGCCTCCTTTCTGTTTCTTCT
TCTCCCCTTTTCCCTTTCCCAATTCTTCTTGCCTCCTCCTTCCCTCTCTC
ATACTCATTCTTCCTTCCTTTTCTTCTCCCTCTTTCCCCCCTTCTCTCTT
TTCTCCTCCTCCCCTCCCTTTCCTCCCTTTTACCCTCTTTCCCCCTTATT
CTTCCTCTTATTTTACCTTCTTCTCTTTTTTCCTCTACTTCTTTCCACTC
GCCTGTTCTTTCTCTTTTCG

Query= MSMg01no397_e06.b1 MSMg01no397_e06.b1 CHROMAT_FILE:
MSMg01no397_e06.b1 PHD_FILE: MSMg01no397_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:38 2005
         (389 letters)



>mm_chr2_65058346_65059134
          Length = 789

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttcaatattctgtattaagcgtgttaattttacagtgaaaaattatttaagaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttcaatattctgtattaagcgtgttaattttacagtgaaaaattatttaagaa 265

                                                                       
Query: 66  aaataaacattttagaaagtgttttgccccattttaaggttgcttctgctacactctggc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaataaacattttagaaagtgttttgccccattttaaggttgcttctgctacactctggc 325

                                                                       
Query: 126 cttgctgaacatagagcaattcttaagacacagatagattcctagaacattgaggcttgg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttgctgaacatagagcaattcttaagacacagatagattcctagaacattgaggcttgg 385

                                                                       
Query: 186 ctttcagacctgccactgcctggtcttgtgactctgcatagtaaaagctcaagataactc 245
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 ctttcagacctgccactgcctggtcttgtgactctgcacagtaaaagctcaagataactc 445

                                                                       
Query: 246 tggaacaagcagtggatgtcagctggatgctgctgctgagcccagaagagtacgtcacgg 305
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 446 tggaacaagcagtggatgtcagctggatgctgctgctgagcccagaagagtacgtcacag 505

                                                                       
Query: 306 tgctcacatgccaacaggcattggccactcctgtgaccagatccaggcaaatcaacacca 365
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 tgctcacatgccaacaggcattggccactcctgtgaccagatccaggcaagtcaacacca 565

                              
Query: 366 ctgtcttttttgttgtttt 384
           |||||||||||||||||||
Sbjct: 566 ctgtcttttttgttgtttt 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no397_e06.g1 MSMg01no397_e06.g1 CHROMAT_FILE:
MSMg01no397_e06.g1 PHD_FILE: MSMg01no397_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:38 2005
         (337 letters)



>mm_chr2_65200352_65201088
          Length = 737

 Score =  598 bits (309), Expect = e-175
 Identities = 330/337 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttacagcagtgcttacaattggtaagaatagtccctgttatcccaacaaattagaagc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 537 atttacagcagtgcttacaattggtaagaatagcccctgttatcccaacaaattagaagc 478

                                                                       
Query: 61  aagggaaagcttctataaaagtaaaaactttaaaagctattgcattccattaatagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aagggaaagcttctataaaagtaaaaactttaaaagctattgcattccattaatagaagc 418

                                                                       
Query: 121 aatattttccagtgtttattattgtttttatagctggagacattccatttcagaaaaggc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agtattttccagtgtttattattgtttttatagctggagacattccatttcagaaaaggc 358

                                                                       
Query: 181 aaggaaaacaagagcctatctactgcaatacccaccaaatatgtaactctttaactataa 240
           |||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct: 357 aaggaaaacaagagcctatctattgcaatacccaccaaatatgtagctgtttaactataa 298

                                                                       
Query: 241 aatttccagattttaatttacttaaaagaatgagtttatcaaatggattgtttttatttt 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 297 aatttccagattttaatttacttaaaagtatgagtttatcaaatggattgtttttatttt 238

                                                
Query: 301 tatttatttcttacttcattttatgtgtgtgtatagg 337
           ||||||||||||| |||||||||||||||||||||||
Sbjct: 237 tatttatttcttatttcattttatgtgtgtgtatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)