BAC Information

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BAC

Clone NameMSMg01-397J05
Chromosome2 (Build37)
Map Location 34,413,210 - 34,413,504
singlet/doubletsinglet
Overlap geneMapkap1
Upstream geneLmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948
Downstream geneLOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397J05.T7 (MSMg01no397_j05.b1)MSMg01-397J05.TJ (MSMg01no397_j05.g1)
ACCAG497883AG497884
length769780
length of high quality
(start - end)
218 (73 - 290)296 (76 - 371)
definitionCHROMAT_FILE: MSMg01no397_j05.b1 PHD_FILE: MSMg01no397_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:03 2005CHROMAT_FILE: MSMg01no397_j05.g1 PHD_FILE: MSMg01no397_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAATCCTCGTGTCGCAAAACGACTCACTATTTTCAGAAAATCCGCGGA
ATTCTTTGTTTTGTCATGACCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAATGAATTTATGAAATTCTTAGGCAAATGGAT
GGACCTGGAGGACATCATCCTGAGTGAGGTACCCCAATCACAAAAGAACT
CAAATGATATGTACTCACTGATAAGTGGATATTAGCCCAGATACTTAGAA
TACCCAAGATATAAGATACAACTTGTGAAACTCATGAAACTCAAGAAGAA
CGAACACCAAAGTGTACAATTTTTTATTTTCATGAAACTCATTAACAACG
AAGACCAAAGTGTGGACACTTTGTCCCTTCTTAGAACTGGGAACAAAACA
TCCATGTGAAGGAGTTACCCACACCAAGTTTGGAGCTGAGATGAAAGGAA
TGACCTTCTATAGACTGCCATATCCTGTGATCCATTCTACATATCAGTCT
CCAACGCTGTATCCATTGCATTACCCTAGCTTGATCTTGCTGAAACGGAT
CCCTGACATTCCTGGTTCCTAACGTAAAAACCTTGTTCTCCTAACTTACC
CCGAACTTGTATGCTCTAATATATCTCTTTTTTAGCCTCCTCTTCTTTCC
CCCTTGCTGTATCCTTCCCATCCTTTTTCTCTCTACCTCCTCCTATCTTC
TTCTCCCTCTCCCTGCCCTTGCTCCTCTCCTTTCTATTTCTTTTCCCCCG
CACTTCGTTTATCTTATCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAACAAGGGTTGCTCTTACCAAA
GGCAGTAACAAGGTGCTGTGGGATCAGCAGTGGGGTCGACCCAGATCATT
GCTCTTCCCTGTGGGGACAATATCTGATCTGGGCCTCCAGGGAGGACTCG
AAGCCTGGGGTAAGGTTGACGAAGCAAACTCCTCTAGAGTCCTGAAGAAC
CTGTGCAGACTCTAGGAAATCCAACTAGGAAGAAGCCATGACAATTTGGG
GACACATGTAGAACTGGGGTAGACCATTGGTGAAACCTGGAGTTTCTCTC
ACAGCAACAATCACTACCAGTACAGTGTGGAGTGACACACCATCTATTTG
GTGAGATTCCCCTGGTGACTCTATACTGGCATTAGGTTTGTTGGAGGTAT
ACTTTTTTCGTTTTCCCACTTGGCTTTACCCCCTTCCCTATTGTTTTTTT
TGGTCTTCTTCATCTGCTGTTTCTTTTCTTTTCACCTTTTCCGCCGTTTC
TTTTCTTCATCTCTCTCCATCCTTCACTGCTCTTCTCTGTTTTCTCTTAA
TCTTCTCACCTTTTCTTTTTATTTTGTTCTAATCATTTTTTTCCTTTTTT
TTCTATTACCACTTCTTCTTTTCCTTTTCTCTTTTTCATCTATTTTCCTT
AACTTCTTGTTTTATTACTCTTTTCTCCCCGTCTTTTTACACCTTTTTCT
CTTATATTCTTTTACACCCTTTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_j05.g1 MSMg01no397_j05.g1 CHROMAT_FILE:
MSMg01no397_j05.g1 PHD_FILE: MSMg01no397_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:03 2005
         (296 letters)



>mm_chr2_34413010_34413705
          Length = 696

 Score =  540 bits (279), Expect = e-158
 Identities = 291/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaacaagggttgctcttaccaaaggcagtaacaaggtgctgtgggatcagcagtgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cagaacaagggttgctcttaccaaaggcagtaacaaggtgctgtgggatcagcagtgggg 436

                                                                       
Query: 61  tcgacccagatcattgctcttccctgtggggacaatatctgatctgggcctccagggagg 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcaacccagatcattgctcttccctgtggggacaatatctgatctgggcctccagggagg 376

                                                                       
Query: 121 actcgaagcctggggtaaggttgacgaagcaaactcctctagagtcctgaagaacctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 375 actcgaagcctggggtaaggttgacgaagcaaactcctctagagtcctgaagaacttgtg 316

                                                                       
Query: 181 cagactctaggaaatccaactaggaagaagccatgacaatttggggacacatgtagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagactctaggaaatccaactaggaagaagccatgacaatttggggacacatgtagaact 256

                                                                  
Query: 241 ggggtagaccattggtgaaacctggagtttctctcacagcaacaatcactaccag 295
           ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 255 ggggtagaccactggtgaaacctggagtttctctcacagcaacaaacactaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)