BAC Information

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BAC

Clone NameMSMg01-397K05
Chromosome2 (Build37)
Map Location 40,745,494 - 40,745,740
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397K05.T7 (MSMg01no397_k05.b1)MSMg01-397K05.TJ (MSMg01no397_k05.g1)
ACCAG497931AG497932
length754776
length of high quality
(start - end)
453 (74 - 526)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no397_k05.b1 PHD_FILE: MSMg01no397_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:08 2005CHROMAT_FILE: MSMg01no397_k05.g1 PHD_FILE: MSMg01no397_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGC
GGAATTCAATCAATTTACTATACAGCATACTCAACCTTATTGTGTGCATT
GAAAGTTGTGGCAAAGTGAAAGTTCATAGCGTTAAGTTTATACATTTAAA
AAATGGAGAGGACACCTACAAAAACACACTGAAAATCTCTAGAACAAAAA
CAAGCAAGCATAATAGGAACAGTAGAAGGCAGGAAAGAATCAAACTGAGG
ACTGAAATCCATAAAATAGAAACAAAGAAAACAATAGAAAGAACCAGTAA
AATTCATTGATAAAATCATCAAGATATTATTAATAGTTATCACTAAAAGA
TAGAAAGAATATTCAAATTAATAAAATCAGAATTAAAAAGGGGAACATAA
CAGTAGACACCAAGGAAATACAAAGAATCATTAAATTTTAATTTAAAACC
CTGTTTTCCAAAAATTAAAAAAAAACTAAAAGAATTGGAAATTTTTCTTG
GTAGATACCACCTTACTAAAGTTAAATCAAGATCAGAAAAATAATCTAAA
AAGACCTGTAACTGCTAATGAAATAGAAACAGTCCTTAAAAAGGCCCCTT
CCCCTAGAGAGATATAGATAGAGAGTACAAGATATACAGTCACAGATATC
CCCTTTTCCTTCCTCTCCTCTCCCTTTCCCCTTCTTCTTCTCTCTTACAA
TTTTCCCCCCCTTCTCCCCATTTTCTTTTATCCATTCTCTTCTTCCTTTT
CTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGATCTAGGGAAAGTGGAAGGAT
CAATACAAGCCATGTGGAAAACAAATGATGGCATAACATCGTGGACCTCA
GAGAATAGCAAGCAGACCTAGGATTACCACTGCCTTTATGATAGTCTCTG
CAAGTTGTACTGATCCTCTGGTCTTCCTTTAATATTATTTTAACCACAAG
ATGGAGAACTGTTGAACTTGGTGCAACATGGCGGCTGGAGTGGGGGCTGG
CATACTAACCTATAGAACAAGATTCTTATTTAAAAGATCAGGAGGATGAC
CAAAAAAAAAAAAACAGAAAGAACAAGAAAATGTTTATGATTACCTGGTC
TCATCAGGCGGGCAAGTTTCAAAATTCTATTGTACTAATTTTTCATTCTT
AAAACTGAAGATACTGCTTATGACCTATCAAAGTTTATTCCAGATATGGA
AGCCCCAACATTATATTCCGATGTTTCTTATACTCTTCGTTCCATTCTAC
TACTCCTCTTTTTCTTTTCCTTTTAGCTTGCAACTTTCTCTTTCTTTTTC
ACTTTTTATACATTCCCCTGCATTCCTTTCCCGTTTTTTTTCTCATTCCC
TACTCTCTCCGTTCCCCTCTTTTTCTTTCCCCTTTCCTAATCATTCTTCC
TCCCTAATTCCTTTCCCCCCCCTCCCTATCCTTACTTTTTTTGCTTCGCC
ACCCACTTTAGTCATTTTCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_k05.g1 MSMg01no397_k05.g1 CHROMAT_FILE:
MSMg01no397_k05.g1 PHD_FILE: MSMg01no397_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:08 2005
         (247 letters)



>mm_chr2_40745294_40745940
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagatctagggaaagtggaaggatcaatacaagccatgtggaaaacaaatgatggcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcagatctagggaaagtggaaggatcaatacaagccatgtggaaaacaaatgatggcata 388

                                                                       
Query: 61  acatcgtggacctcagagaatagcaagcagacctaggattaccactgcctttatgatagt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 387 acatcgtggacctcagagaatagcaagcagacctaggatcaccactgtctttatgatagt 328

                                                                       
Query: 121 ctctgcaagttgtactgatcctctggtcttcctttaatattattttaaccacaagatgga 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 327 ctctgcaagtcgtactgatcctctggtcttcctttaatattattttaaccacatgatgga 268

                                                                       
Query: 181 gaactgttgaacttggtgcaacatggcggctggagtgggggctggcatactaacctatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaactgttgaacttggtgcaacatggcggctggagtgggggctggcatactaacctatag 208

                  
Query: 241 aacaaga 247
           |||||||
Sbjct: 207 aacaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)