BAC Information

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BAC

Clone NameMSMg01-397K16
Chromosome2 (Build37)
Map Location 119,141,102 - 119,141,346
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr176, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18
Downstream geneLOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397K16.T7 (MSMg01no397_k16.b1)MSMg01-397K16.TJ (MSMg01no397_k16.g1)
ACCAG497953AG497954
length1,082794
length of high quality
(start - end)
---247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no397_k16.b1 PHD_FILE: MSMg01no397_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:10 2005CHROMAT_FILE: MSMg01no397_k16.g1 PHD_FILE: MSMg01no397_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAAAATCTTGGGGTGGGGGAGAGAANGAANNNNACAACNATGACGTG
TACCTCGCCTNNNGGGAANNNNNNNNCTTTTTATACCCCTACCCTGCGCG
GGGGAGGNNAANNACGNCAGCCGCGGCACAACCGGCGGCCACAAGCGAGA
GCGATTTTTTAAGCCCCCCNCAACGGCCGAAGCGGCCCGAGGGAGGCACG
CCNCGCCAAGGGACGGCCCAGCCCACCGCAGAAGAGAGGAGGCCCCCCCG
ACGGCATGGCGAGNAACACCCGAANNGCCGGGCCGACGAACGGACACAGC
GCGCGAGGGAACCCGCACGCACAGGCAGAAAGAGCCTTTTTTTTTGTAAG
CGAACCGCTCTCTATTGTACTGGCGCGGTTTCGGAGCCTCAGCCGACCAT
CAGCATACAACGCCCAGGCGCGAATTTTTTTCTGTGTGTTCCGNAGGGCC
GCCCGAGCCAGGGACCAGGCCAGGAAGCCGGAATATCTTCCCCCACCCCT
CTGGAATGTCGGGGGCAGCACACCCCCTTTCGGCCTTGCGTAAGGGTTTG
TCGGAACCCCCCCCCACCCACCGGAGTTGTGTATTACGGTTTACGCCGAA
GTCGTTGTATCGTACATACTGGGCAGGGGTGACGGCCGNCTGATCTACCC
GGTCGCCGCTCGCCTTAATATCCCGCCCTATGTCGTCGCGTTTTCCTCAC
GACGCGGCGCGCGGCTGTGTTATACCCGGTCTGATTGATATCGTCGACGA
CCGTCATCGGCGCGCGCGGACAGCGGTTACTCTATTTATAGACTACATGT
TATCTGCACGCATCTGCCTTGACTCGCAGCAGACGAATTAGAGTCCTGAT
ATATCCGATCAGCANCGCACACTATCTCATGCGTGAATCATCGGGCGCGC
GGCCGCCGGGCATAACGCGGAAAGATATTCCCGTATATTCCGCACGCCGT
TAATGTGTTTCCGCCACCCGTACTGAGTGGTGGCGGGGTGTGTTCGTTAT
GATCTCGATTTCAGATATATTTCTGGGCGGGCATCTACCCCGCGCCGTCC
GTTCGCCCGGTTTTGCTTGCTCCGCTATTACN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCTGCCTAGGTTTCAACACTTTG
CAAGACTATCCCAGTCTCTTTAGACGCTTTGGTCATAGAAAGCACATTTG
CTGGTTGATCCATAAGTTCTACTGTGATCAGTGTGGGCAGCTGGTATAGG
AGAGCTGTTTGTTCTGACCCTCCATGATGTTTTCTGGAATGGAACAGCAG
AGGAAGTGTCCACCAATCTCTTGGGTCCAAGATATCTCTCCTGCGTTTAA
GGACCTGCCAGCTGCACCTGTTTGTCACTCAGGACAGGGCCAGCTTACGG
ATATGGTAAGTCCTGGTCTGTTCCCTAGGCAGCCGCACTGCTCTCTGCTT
TTTCTCCCCTTTCCCCCCCCCCTTGTCCTGGTTGTCTTCTTTTCTTCTTC
GTCTATTTTCCCTCCTTTCTTCTCCGCTTTATTTTTCGCTTTTACCCCCC
CCTTCTTTTCTCTTCTCATTTACCCCCCCCTCTCCTCTTCCTTGCCCCTT
TTTATTCTATCTCTCACCCCTGTTATCCTTCCTACTTTCTCTTTGCCTTT
CCTTCCTCCTTTCTTTTTTTTTTTTCTTTTTACTTCCTCTTTTATACTTC
TCTTCTCCCAGATTGTTCTTTTTTTTTGTTCCCCCCTCCTTTTCTCCCTT
TTTCCTTTTTTCTGCTCTCTGTTATCCTCTCTATCTTTTCTCATTCTTTT
ATTCCTTTTCTCTTCTTCCCCTCCCCCTTATCTCTCTTTTATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_k16.g1 MSMg01no397_k16.g1 CHROMAT_FILE:
MSMg01no397_k16.g1 PHD_FILE: MSMg01no397_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:10 2005
         (247 letters)



>mm_chr2_119140902_119141548
          Length = 647

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcctgcctaggtttcaacactttgcaagactatcccagtctctttagacgctttggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcctgcctaggtttcaacactttgcaagactatcccagtctctttagacgctttggtca 386

                                                                       
Query: 61  tagaaagcacatttgctggttgatccataagttctactgtgatcagtgtgggcagctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaagcacatttgctggttgatccataagttctactgtgatcagtgtgggcagctggt 326

                                                                       
Query: 121 ataggagagctgtttgttctgaccctccatgatgttttctggaatggaacagcagaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataggagagctgtttgttctgaccctccatgatgttttctggaatggaacagcagaggaa 266

                                                                       
Query: 181 gtgtccaccaatctcttgggtccaagatatctctcctgcgtttaaggacctgccagctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgtccaccaatctcttgggtccaagatatctctcctgcgtttaaggacctgccagctgc 206

                
Query: 241 acctg 245
           |||||
Sbjct: 205 acctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)