NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGATATTCTTCATTGTAATATTTTATAAGTGTAAAATACCTG
AATGGTAAATGACTTAGATTTCATTGAAATATTTTAAGTCTTTTCAGTCA
ACAGTCAATAAAAACATGGTTAAAAGGCTCATTGGCCAGAAACCTTATCA
GATTGGAGAGAGTACTTCTTATCAGATTGGAGAGAGTGTGACTGAGTTAT
TTGGATCCACTTTTCCCTTCTCTGCTAATAAAGGAAACACTGCCCTTGTT
TCTGTAGAGATGATACCATGAATCATGGAGAAAGGAAAGTCCTAGACCTT
CTGTTTCTCTTCCTAGAATAGTCTCATAAGGAAACTTCGGAGAGTCATCA
ATGACTATCATTTGAACCTAGCTGCTAAAATCAGATGAGGTACCAAATTA
TTTACCTCAATGCAGAATACAGTCACCTTCCTGATTGCTTTCATTTTTAT
CACTGTCTTTGTTGACTGCCGTTACTGAGCAATCTTTCTGGAAATAAGCA
AAGGAGGCTTAGCTGGAAGTGGTAGTGCTGATGACTGTGAACGCCACTGA
TGATAATTTGTGCAGCTGGAAAGAAATTTCAGAGTGTGATCATCCCTGAG
ATTCAGCTTTTGCACAGAAAAGAACTTCACCTTGCAAAATTCAGAATCTT
TTCCAACCTACAAAGGGTTTATCCTTTAATAAACCATTCCCCCATCN

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCCTCACTTGGTGCCCAATTTA
CTAAGATCTTAATGTTTTGAATGAATGTTAAAAGTTTATTCTTCTTCATG
TAATAAGTTACTTTTTTCTTCCACTCTTACTGTCATATTATTCTTCCAGT
CTTTTCTATATTAGACTATACCTATGTATCTGAGCTGGATTTGTGAGTTG
ATTATGGTACTGCATTGCATAACTAGATCTGACTAATATTATTTTGTTTC
TGAGTTTTAAATGTTTGATTTTTTATTAGNTATTTCTCCTTTACTCTTTT
CTTTTTTTCCATTTTTAATTAGGTATTTAGCTCATTTACATTTCCAATGC
TATACCAAAAGTCCCCCACACCCACCCACCCCATACTCTTTTCTTTAATA
TTAAAAAAGAATCATCTTTGTCGAATTTTGGTAACAGAATTTTGTTTCCT
TCACCCGAAGAATTATACTTGAGGAAAATTTTTCCCCCGTTTGTTTCCTT
AAATAAATAAATTTTGATTTTTTTTTAGAATTTCTAACCAAATTATTCTT
GCCCCTTTTCTTAATTAATACCGGATACTCTTCCACATTATATCTTTATA
CCCCTCCCTCTCTTTTCCTTTTTAAATAATCAGGCACCCTATCCCCTCTC
CCTCTTTTTTCCTTTTCTTTCCCCCCCCTTCTCATTTCTTTTTCCACTGC
CCTTCCTCACTTTCTTTTTTCTGTCTTG

Query= MSMg01no397_m09.b1 MSMg01no397_m09.b1 CHROMAT_FILE:
MSMg01no397_m09.b1 PHD_FILE: MSMg01no397_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:19 2005
         (482 letters)



>mm_chr2_116081002_116081883
          Length = 882

 Score =  901 bits (466), Expect = 0.0
 Identities = 478/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtaatattttataagtgtaaaatacctgaatggtaaatgacttagatttcattgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttgtaatattttataagtgtaaaatacctgaatggtaaatgacttagatttcattgaaat 623

                                                                       
Query: 61  attttaagtcttttcagtcaacagtcaataaaaacatggttaaaaggctcattggccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attttaagtcttttcagtcaacagtcaataaaaacatggttaaaaggctcattggccaga 563

                                                                       
Query: 121 aaccttatcagattggagagagtacttcttatcagattggagagagtgtgactgagttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaccttatcagattggagagagtacttcttatcagattggagagagtgtgactgagttat 503

                                                                       
Query: 181 ttggatccacttttcccttctctgctaataaaggaaacactgcccttgtttctgtagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttggatccacttttcccttctctgctaataaaggaaacactgcccttgtttctgtagaga 443

                                                                       
Query: 241 tgataccatgaatcatggagaaaggaaagtcctagaccttctgtttctcttcctagaata 300
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 tgataccatgaagcatggagaaagggaagtcctagaccttctgtttctcttcctagaata 383

                                                                       
Query: 301 gtctcataaggaaacttcggagagtcatcaatgactatcatttgaacctagctgctaaaa 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atctcataaggaaacttcggagagtcatcaatgactatcatttgaacctagctgctaaaa 323

                                                                       
Query: 361 tcagatgaggtaccaaattatttacctcaatgcagaatacagtcaccttcctgattgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcagatgaggtaccaaattatttacctcaatgcagaatacagtcaccttcctgattgctt 263

                                                                       
Query: 421 tcatttttatcactgtctttgttgactgccgttactgagcaatctttctggaaataagca 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 262 tcatttttatcactgtctttgttgactgccgttactgagcagtctttctggaaataagca 203

             
Query: 481 aa 482
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no397_m09.g1 MSMg01no397_m09.g1 CHROMAT_FILE:
MSMg01no397_m09.g1 PHD_FILE: MSMg01no397_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:19 2005
         (245 letters)



>mm_chr2_115916346_115916990
          Length = 645

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccctcacttggtgcccaatttactaagatcttaatgttttgaatgaatgttaaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccctcacttggtgcccaatttactaagatcttaatgttttgaatgaatgttaaaagtt 260

                                                                       
Query: 61  tattcttcttcatgtaataagttacttttttcttccactcttactgtcatattattcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattcttcttcatgtaataagttacttttttcttccactcttactgtcatattattcttc 320

                                                                       
Query: 121 cagtcttttctatattagactatacctatgtatctgagctggatttgtgagttgattatg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtcttttctatattagactatacttatgtatctgagctggatttgtgagttgattatg 380

                                                                       
Query: 181 gtactgcattgcataactagatctgactaatattattttgtttctgagttttaaatgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gtactgcattgcataactagatctgactaatattattttgtttctgaattttaaatgttt 440

             
Query: 241 ga 242
           ||
Sbjct: 441 ga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)