BAC Information

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BAC

Clone NameMSMg01-398J17
Chromosome2 (Build37)
Map Location 110,779,059 - 110,779,222
singlet/doubletsinglet
Overlap genenone
Upstream geneLgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398J17.T7 (MSMg01no398_j17.b1)MSMg01-398J17.TJ (MSMg01no398_j17.g1)
ACCAG498669AG498670
length843827
length of high quality
(start - end)
164 (72 - 235)42 (81 - 122)
definitionCHROMAT_FILE: MSMg01no398_j17.b1 PHD_FILE: MSMg01no398_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:24 2005CHROMAT_FILE: MSMg01no398_j17.g1 PHD_FILE: MSMg01no398_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTGATTTTCAAGGTATATATTTTGCTTTTTATTCTACTAATA
TCTGGGACTGTTTCTTCCTTTTATACAACATATATTAGTTCATTTACACA
TTTCCCTCTCCACTGTTTTTCTTAGATGTTTAAATTATGTTTACCGACTT
GGGGGAGGGATTGGCAGAATACATGTATGGCAATAAGATGATAACCAGTA
CTTTGTCTTCTTTCACCATGTGGTTTCTAGTTCTGAATTGATTCTCTCAG
ACTTATGGACGAGTTTCTTTTTTTTTTCTGCCCCACCTTGCCCGTTTTTC
CCACATTACTTTGCTTCACCTTATTTATTTTAAGCTACGCCGATTGCTCT
TGTTCTACCCCTTTTTTCTTCTTCCCCACCACTATTTTTGTTATTGTTTT
TCCTCGCCCCTGTTTCTTCCCCCCCTTTTTTTTCCCTCCCTTTATTTCCC
CCCTCTTTCTCCTTCTTTCCCCCCTATTCTCCACCCTTCTTGTTCTTCCC
TCGCCTTTCCTCTTCTCTCCCTCGCTTTCTTTCCCCTGCCTTTTTTTCTT
CTACCTCTTTTTCTCTCGCCCCTTCCCTTGTTTTTTCTCTCTCTCTCCCT
CTTTTTTTTTCTTTTTCCTTCCCCCTTTTTTTACCGTTTCTTTGCCCTTT
TTCCATCCCCCTTTTTTCTTTATCCTCCCCCCCTTCTTCTTATCTCTTTT
TTTTCTTTTCTCTTTCTTTTTACCCCTTCTTCTTTTTCCTTCCCTCTTCT
TCCCCCCTTTTTTCTCTTCTCGTTATTTTGCCTCACCTCTCTN
CCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTATCCCGCACAATTCCTGGGNTTCTGCCATCTGT
CTGTATAATTAAAAGTAACACTATGTACCCTATGCTAGGATGTAGAGAGA
AGTTCGTCTTTTTTATCAAAATTGACTGAGCAGAGAGTAAAAAATACAGA
GAGTGATCAAATATTTGTATTACCATCCTCCTTGACCTTGCACAGAGGCT
CTCGACATTTTTTTTTTATCTTGCGACACAACGACCAACCCCCATTCCAC
CCCACCCCCTCCCCGTCCCCCCCCCACCTTTTTCTTTTTTCCCCCCCCCT
CACCTCTCTCTTCTCCACCACACCTTTTCCCCCCCCACCCCCTCCTTCGC
TTCCTTTTTCTCCCCCTCCTTTCTTTTTCTCCTCCCCCCCCCCCTTTTTT
CTCTCTTTCTACTCTCCCTTTTCCTTTTTTCCCCCCCTCCACTCCTTCAC
CCCTTCCTCTTTCCCTCCATTTCCCCCCTCCTCTCTCTCTTCTTTCTGCT
CTTTCTCCCTCCCTTCCCCCTCTTCTTCCCTCCTATCTCTTCCTCATTTC
CTCCCTCTTCTACTCTCCTTTAATCCCTCTCTATCCCTCCCTTCCCACCT
CCTTTCTTTTCCTTATTCCTCCTTCTCCCTCCTCCCTTTTTCTCCTCTCT
CTTTATTTTTTTTTCTCCTCTCCTCCACCCCTTCCCCTTCCCTAGCCTCT
TTTCTTCCTCTCTCCTCTACTACCCCCCTTTTCCTTCTTCCGCACTCCCT
ACCGCCTCTTCTTCTTTCACTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_j17.b1 MSMg01no398_j17.b1 CHROMAT_FILE:
MSMg01no398_j17.b1 PHD_FILE: MSMg01no398_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:24 2005
         (164 letters)



>mm_chr2_110778859_110779422
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatattttgctttttattctactaatatctgggactgtttcttccttttatacaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tatatattttgctttttattctactaatatctgggactgtttcttccttttatacaacat 305

                                                                       
Query: 61  atattagttcatttacacatttccctctccactgtttttcttagatgtttaaattatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 304 atattagttcatttacacatttccctctccactgtttttcttaaatgtttaaattatgtt 245

                                                       
Query: 121 taccgacttgggggagggattggcagaatacatgtatggcaata 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taccgacttgggggagggattggcagaatacatgtatggcaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)