Query= MSMg01no398_o24.b1 MSMg01no398_o24.b1 CHROMAT_FILE:
MSMg01no398_o24.b1 PHD_FILE: MSMg01no398_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:49 2005
(503 letters)
>mm_chr2_68879442_68880344
Length = 903
Score = 913 bits (472), Expect = 0.0
Identities = 484/488 (99%)
Strand = Plus / Minus
Query: 5 gaattccaggacattccgagctccatagtgagaccctgtctcaaaaggaaaaaccaacaa 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaattccaggacagtcagagctccatagtgagaccctgtctcaaaaggaaaaaccaacaa 429
Query: 65 aactctcctggctctcacatggctgaagaaagacagcctaaataccctgtcctttgtaca 124
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 428 aactctcctggctctcacatggctgaagaaagacagcctaaatacactgtcatttgtaca 369
Query: 125 gataaaacaataaatgtgtggctttttggattatgtatgggaattctaagatagtaatta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gataaaacaataaatgtgtggctttttggattatgtatgggaattctaagatagtaatta 309
Query: 185 atccctgagttaagttaatgtgtattagtaatgttgtgtttgtatgtgtatacacacaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atccctgagttaagttaatgtgtattagtaatgttgtgtttgtatgtgtatacacacaca 249
Query: 245 cacacatacacacacaatccttttacaaaactgcttttgctgaaactaccctgaaaaaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cacacatacacacacaatccttttacaaaactgcttttgctgaaactaccctgaaaaaac 189
Query: 305 tcctatcaagcaacatttcaaccttactataaaaaaacaggcttccacattggcagtgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tcctatcaagcaacatttcaaccttactataaaaaaacaggcttccacattggcagtgaa 129
Query: 365 cttatactagaaaaatctctctttgttcacactgaattcaatcggtaagtcccataatac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cttatactagaaaaatctctctttgttcacactgaattcaatcggtaagtcccataatac 69
Query: 425 tgtgttttctttctgtgaaagcttagcatgttttcttgacaccgcaaagggggtcaccct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tgtgttttctttctgtgaaagcttagcatgttttcttgacaccgcaaagggggtcaccct 9
Query: 485 ctgtgaca 492
||||||||
Sbjct: 8 ctgtgaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_o24.g1 MSMg01no398_o24.g1 CHROMAT_FILE:
MSMg01no398_o24.g1 PHD_FILE: MSMg01no398_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:49 2005
(244 letters)
>mm_chr2_68707716_68708359
Length = 644
Score = 389 bits (201), Expect = e-112
Identities = 239/263 (90%), Gaps = 19/263 (7%)
Strand = Plus / Plus
Query: 1 agtgtgtggttctcctgcatttcaggattacagtaaatgt--atcccagtcagtgcagga 58
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 182 agtgtgtggttctcctgcatttcaggattacagtaaatgtgtatcccagtcagtgcagga 241
Query: 59 tacatttacaagcaaggacaacgacagcatggtaatttccgcctgagccatgtgacatgg 118
||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct: 242 tacatttacaagcaaggacaatgacagcatggtaatttcctcctgagccatgtggcatgg 301
Query: 119 gccatgg-----------------agaggtgagatcaggtttggttctcttgcctctttc 161
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 302 gccatggttctgaggagatttgggagaggtgagatcaggtttggttctcttgcctctttc 361
Query: 162 ccttcgctgtcacatgctgtttggaagcaagtgattagaacatctgaatatttgaatata 221
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 catttgctgtcacatgctgtttggaagcaagtgattagaacatctgaatatttgaatata 421
Query: 222 actttctgaaagctgcatagtgc 244
|||||||||||||||||||||||
Sbjct: 422 actttctgaaagctgcatagtgc 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
