BAC Information

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BAC

Clone NameMSMg01-398P08
Chromosome2 (Build37)
Map Location 115,016,283 - 115,016,563
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp770, Atpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398P08.T7 (MSMg01no398_p08.b1)MSMg01-398P08.TJ (MSMg01no398_p08.g1)
ACCAG498939AG498940
length769751
length of high quality
(start - end)
83 (122 - 204)280 (127 - 406)
definitionCHROMAT_FILE: MSMg01no398_p08.b1 PHD_FILE: MSMg01no398_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:51 2005CHROMAT_FILE: MSMg01no398_p08.g1 PHD_FILE: MSMg01no398_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGCAGGTGGGCGGAANN
CANNNCATTTACTACAAACAGAGGGTCCCCAATACTCGGAGAGCTTTACA
TGGNAACAACTTATTGGCACGCTGCTTCTGACGATGTTCCCCTTCACCCC
CTCAATTTTCTACTTCTCTCAAGGTCTCACTTAGAAAAATATTAGAGGTC
AAGTCTCAGTAGAGATTATTATTATTATTATTATTATTATTATTATTATT
ATTATTATTCCCTTTGGGTATGCAAAAGACAATTTTCCCGAATCATCTTA
TAAAACATCGTTATTTTTTTTTTGGAGAAAGCTGAAAATGAGAGCAAAAT
TAAGGGTACTTCTGCACTCGCTTGAAGATTAAACTAAAGTATTGGATTTC
TGGCTAGCTCCTCCCCCGATTATCCATGCTATTGGTAAGCGTTTTGCCTG
ATCAATGATCTTCCCATGAATTGTGGATTTAGTTAACACCAGATCACATC
TTGGAGCTCTGACTTATAGATACTACAGAGAATGTAAATATCCTTCAGCC
CAGCTTACAGCTGTATTTGAAAGCTCTGACTTATAGGCATTTCTCGATGT
TCTACCACCCCTGTCCTTTCCAGCGCTGCGTATAGTACCTCTACCCATTC
TCTTCATTGTTACAGAACTTTGCATTCTCCCGGATTTTATTATTCAAATT
GTTCTTTCCCCGTCTACCCTAATGCCCTATCCATGAATTTTTTGCCCACT
TTCCACGCCCACCCACCCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTACCTGGAGGNNGA
ACNANAGAAGGTTTCGNAAACATCGAGNNAANGNNCATTTGNGAAAATCT
AGACAATAACAGACTTCTTAAACCTGGAGGGCTTTCTCGTCTAATATTGG
CTTTTTAAAAAATGATCAATGTAAAACAAGCGTTGATAGACATATATGCT
ATTTGAAACATACAGTTTACTTTTCTCTGTTATAAAGATATCCCAAACTT
TTATTTTATCTATGAACTTTAATTATTACTAACAAGTTAGTGTTTATGAA
AAAGTCAGTAACACTCTTATCCTATTTTCTTAATTTTTATAGAGAAGGGC
TTAGGGCCTATGAACTTCAAAGTCATTGTCTGCTTTAAAATTACATTGCT
GGAAGAGTATATGACCACTTTAATGCTTTAATGTGCATTAAATACCATTA
TTAAATACCCTTAGTAAAAAATCAGATACTTCAAATAAATATGTAACTAC
TGTTAATTAAATGTGAGCTGTGGTGGACGTCATTTTCAACATAGATTTTT
CTTGGCCAATTTACATGTTCAAAGCCAGAGTCTCCTATATTGTGAAAAAG
AACAATCTTAGAATCACAATGCCCATTTTATAACATTCCAATTCGATCAC
CCATTTGAGAATAAAGTCAGCAATTGAAGCAAAGTTGCGTGTACCACCGC
ATGTACGGCTAGACTTTTACCATCTTAAAACTTTTATTTTTACTAATATT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_p08.g1 MSMg01no398_p08.g1 CHROMAT_FILE:
MSMg01no398_p08.g1 PHD_FILE: MSMg01no398_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:51 2005
         (280 letters)



>mm_chr2_115016083_115016763
          Length = 681

 Score =  503 bits (260), Expect = e-147
 Identities = 276/282 (97%), Gaps = 3/282 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagggctttctcgtctaatattggctttttaaaaaatgatcaatgtaaaacaagcgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagggctttctcgtctaatattggctttttaaaaaatgatcaatgtaaaacaagcgttga 260

                                                                       
Query: 61  tagacatatatgctatttgaaacatacagtttacttttctctgttataaagatatcccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagacatatatgctatttgaaacatacagtttacttttctctgttataaagatatcccaa 320

                                                                       
Query: 121 acttttattttatctatgaactttaattattactaacaagttagtgtttatgaaaaagtc 180
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttagattttatctatgaactttaattattactaacaagttagtgtttatgaaaaagtc 380

                                                                       
Query: 181 agtaacactctta--tcctattttcttaatttttatagagaagggcttagggcctatgaa 238
           |||||||||| ||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaacactcctaaatc-tattttcttaatttttatagagaagggcttagggcctatgaa 439

                                                     
Query: 239 cttcaaagtcattgtctgctttaaaattacattgctggaaga 280
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttcaaagtcattgtctgctttaaaattacattgctggaaga 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 681
Length adjustment: 9
Effective length of query: 271
Effective length of database: 672
Effective search space:   182112
Effective search space used:   182112
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)