NTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCC
GCGGAATTCCAGATCTTAGCTGGTGAAGACTCAGGACAAACTGCAGGTGA
GGGAAGTGGATGGATTTAGGGCCTGTTTTGAATTGTCAACCGTTAGTTTT
CCCTGCCGATTGTATGAGTAAGAAATAAAATAGAAGCATCAAAGTGGGAC
TGTGAGTATCTGTCAGAACAAAAAAGAATAAAAGCCTTGGAATTACATTA
ACCTTGATTCAAACCATGTTTCACTATTAATGTGACATTAGGCAAATTAC
TTAACATTTACATGGCTTCATTTTCTCAGACTAAGTGGCAATGGCAATGT
TTAATCTACACACCAAGTCAAAGCTGTGGAGCAAACATCAGGCACTGGAT
AGTAGCAGTGAATTATATGACAGGCATGGCTGTGTGTGCTTCTTATCGCT
TGTCAGCATGAATTCTTCTGCTGCCTGAGAAAGGAGGTCTTCCTGTTATC
TCACAGAGGATCTGAGCCCCTACTGCAATATTACCTGTTTTCATACTTAC
TACACTTTATAGGATACATTTGAGGCTTTCTATCAGACCCTTAAAAATAT
AATTCATGCTTTCATCTACTATGCTCTTTTGCGTCCCATGGGAAAAATAC
ATTTTATCACATCCAGCGAAACCATCATTACTTTATGTACCTATCAGCAT
TTAAATCATTGCATGCAGTAAGTAAACTTACCACTTATAAATTCTTAN

NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGATAGACATGTTATGCCTAATTT
TTAAACACTTTCCCCTTTTGACTTTTGAACATTTCTAATTCGAAGGTCAC
TGTTTTTATTAATTACTGAAACTCACCTGGATCATCTTGAAACTCTAAAC
TACCCATATTTTAATTCTAGCTTTGCTTCAAACTCCCTTTGTCATGTCTT
CTTGATAGATATTCATACTTCATTGTCACCAGTTACTTTTGGCTCTAAAA
TTTCCTTCACTGTGTGTCTCCTAGTGGTTACCACATTTACTCCTTTTACC
CCTTACTAAATATATGGTCATCTGCTCAGCTTCCAAGACTCTTCATACTG
ATTTATAAATATTTTTCAAAATATATAATCTATGGCAAGCATGTTTCCGA
GTGTTCAGGACACACTATGAATTAAAAAAAAAAGTTTTTTAAATCGGGCC
CTTTTATAAAAAATTGCATTTGTCCAAAACACCCCAAAAAATAATTAATT
ATTCTAAACTACTTCTCCTTCTCTTTTTTTTGACACACCCCTCTCCCTTT
TTCATAATTATTTTTGCCTCCCTCCACACAAACGGTAGGCTTTTTTTTTT
CTTTTTTCCCTCCCCTTTTTATAAAAACACCCCTTATCCCCTTTTCTTTT
TTTTTATTATTAGTCACCCATACCTCTTCCTTTATTTCCTCCTTCCTATG
TTCTTCTTGTTCTTCCCCCCTACTATCG

Query= MSMg01no399_d24.b1 MSMg01no399_d24.b1 CHROMAT_FILE:
MSMg01no399_d24.b1 PHD_FILE: MSMg01no399_d24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:13 2005
         (519 letters)



>mm_chr2_45651329_45652247
          Length = 919

 Score =  845 bits (437), Expect = 0.0
 Identities = 437/437 (100%)
 Strand = Plus / Minus

                                                                       
Query: 83  tgaattgtcaaccgttagttttccctgccgattgtatgagtaagaaataaaatagaagca 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tgaattgtcaaccgttagttttccctgccgattgtatgagtaagaaataaaatagaagca 860

                                                                       
Query: 143 tcaaagtgggactgtgagtatctgtcagaacaaaaaagaataaaagccttggaattacat 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tcaaagtgggactgtgagtatctgtcagaacaaaaaagaataaaagccttggaattacat 800

                                                                       
Query: 203 taaccttgattcaaaccatgtttcactattaatgtgacattaggcaaattacttaacatt 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 taaccttgattcaaaccatgtttcactattaatgtgacattaggcaaattacttaacatt 740

                                                                       
Query: 263 tacatggcttcattttctcagactaagtggcaatggcaatgtttaatctacacaccaagt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tacatggcttcattttctcagactaagtggcaatggcaatgtttaatctacacaccaagt 680

                                                                       
Query: 323 caaagctgtggagcaaacatcaggcactggatagtagcagtgaattatatgacaggcatg 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 caaagctgtggagcaaacatcaggcactggatagtagcagtgaattatatgacaggcatg 620

                                                                       
Query: 383 gctgtgtgtgcttcttatcgcttgtcagcatgaattcttctgctgcctgagaaaggaggt 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gctgtgtgtgcttcttatcgcttgtcagcatgaattcttctgctgcctgagaaaggaggt 560

                                                                       
Query: 443 cttcctgttatctcacagaggatctgagcccctactgcaatattacctgttttcatactt 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttcctgttatctcacagaggatctgagcccctactgcaatattacctgttttcatactt 500

                            
Query: 503 actacactttataggat 519
           |||||||||||||||||
Sbjct: 499 actacactttataggat 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no399_d24.g1 MSMg01no399_d24.g1 CHROMAT_FILE:
MSMg01no399_d24.g1 PHD_FILE: MSMg01no399_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:13 2005
         (389 letters)



>mm_chr2_45475081_45475869
          Length = 789

 Score =  729 bits (377), Expect = 0.0
 Identities = 386/389 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgatagacatgttatgcctaatttttaaacactttccccttttgacttttgaacattt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgatagagatgttatgcctaatttttaaacactttccccttttgacttttgaacattt 260

                                                                       
Query: 61  ctaattcgaaggtcactgtttttattaattactgaaactcacctggatcatcttgaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaattcgaaggtcactgtttttattaattactgaaactcacctggatcatcttgaaact 320

                                                                       
Query: 121 ctaaactacccatattttaattctagctttgcttcaaactccctttgtcatgtcttcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaactacccatattttaattctagctttgcttcaaactccctttgtcatgtcttcttg 380

                                                                       
Query: 181 atagatattcatacttcattgtcaccagttacttttggctctaaaatttccttcactgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagatattcatacttcattgtcaccagttacttttggctctaaaatttccttcactgtg 440

                                                                       
Query: 241 tgtctcctagtggttaccacatttactccttttaccccttactaaatatatggtcatctg 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctccaagtggttaccacatttactccttttaccccttactaaatatatggtcatctg 500

                                                                       
Query: 301 ctcagcttccaagactcttcatactgatttataaatatttttcaaaatatataatctatg 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ctcagcttccaagactcttcatactgatttataaatattttttaaaatatataatctatg 560

                                        
Query: 361 gcaagcatgtttccgagtgttcaggacac 389
           |||||||||||||||||||||||||||||
Sbjct: 561 gcaagcatgtttccgagtgttcaggacac 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)