BAC Information

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BAC

Clone NameMSMg01-399F01
Chromosome2 (Build37)
Map Location 113,638,378 - 113,638,882
singlet/doubletsinglet
Overlap geneScg5
Upstream geneRyr3, 4930563P21Rik, Fmn1, Grem1, LOC100043520
Downstream geneArhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399F01.T7 (MSMg01no399_f01.b1)MSMg01-399F01.TJ (MSMg01no399_f01.g1)
ACCAG499207AG499208
length727816
length of high quality
(start - end)
519 (68 - 586)177 (83 - 259)
definitionCHROMAT_FILE: MSMg01no399_f01.b1 PHD_FILE: MSMg01no399_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:18 2005CHROMAT_FILE: MSMg01no399_f01.g1 PHD_FILE: MSMg01no399_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAAAGAGGATCCGCGGA
ATTCTAGATTATCATTACTTGCCCTTTAGCAAGTTTGTAGTCTGACATTT
TGTAGTCTGCAGCTCCAACATGGTTTCCATTCTGAAAGACATCAGAAGCA
TGCCATGGGGCCTGGTGCAGCCCAGTGGCTTTCCTTTCCTTTCCATTTGT
TTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTAGATTAGCTCTGGAGCA
ACAGTGGCAGAATGACTTGTTAGGATAACTGGTGTCTCTGGTAGTTTCTG
GTAGTTTCTATCTCCCTCCGGGGGCCCAAATACGTCAGTGACCAGGGGGT
TAGCTTCCCACTGGAGAGAAGGTACCAGCAGAAACACTCTGAGATGGGCA
GTCAGCCTCTGTCCCCGCTCCCGACTTCTTTCGTGTCTGATTGCCGCCTC
ATGCCAGAAGGCTCAGCTTGTCCAGACGGATCCCTGCCCGGCAGGCTTTG
CCTCACAATTTGGTAACACCCTGACAAGCTCGCAGCCAGCAGAGTTCCAT
CAGTGCCCCTCGCCCCATGCCGAGGCTGTCTGTGGAGCCATGAAGCTGGG
CTTCAGTGCTGAGCCATAAAGTAGAACTGTGGTGCGGCAGCCTGGCGCCA
AGGAGCTAGTCTCCCACCTCATAAAACGGAATTTTGTGAGTATAGTCTGG
CACGCAGAGGGTATATATTTTTTTAAG
TTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGAGCAACTTTCTC
ACTCAAACGCAACGTTTCCCTGAGCTTCCAGCCCCGCTCTTGCCCTGACG
ATGTTGGAGTTGCCTGTTTGTTGAATCACATGAGCCAATTCTTTAGATCA
GTCTCTTCCCACAGGAACACACACCATGGGTCTCATTTCTCTGAGAACCC
TGAAGAACAGAGAGGACACATTCTACTGCGAGATGAGGAAGAATCTCTAC
TCTCATCTCCCATCGCTGCTGGAAGGNCTTCTAGAAAACTTCCTTCTTAA
AAAAAACCTGCTGCAAGTTACATTCGATGAAAGAGGGCAGATTAGAAGCT
TACTATAGAACTAGCCTTTACTCTCCCGTTATAATCCCCCGGTGGAAAAA
AAAAAAGGGGGGCCCCCTCCCCCCGAGGGGTTTTTTTTTTTTTTTTTCTC
GCGGGAAAATTTCCCCTTTCTTTTTTACCAAACAAATATAATCATGTTGT
TATTTTCCTGGCCCCTTTCCCCTGGGGCACATTACTCCCTTTTGATATTA
ATCACCCTCCCCTTTTTACGCCCTTTTTTTTCTTAATAACGAGTGCTCTA
TCCCTAAAAGACAACTTTTTTCTCTGGTTCTTTTTTTTCTTCGCTTCGTG
GTACATTTAATATATGTCCCCTTTTCCTAAAGGCGCGCTTTCTTCTATTT
CTATGCCCCTCTTCCTTTTAATCCCTTCTTTTTTCTTTTTTCTTACTACC
CTTTCCACTTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_f01.b1 MSMg01no399_f01.b1 CHROMAT_FILE:
MSMg01no399_f01.b1 PHD_FILE: MSMg01no399_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:18 2005
         (519 letters)



>mm_chr2_113638178_113639096
          Length = 919

 Score =  924 bits (478), Expect = 0.0
 Identities = 503/520 (96%), Gaps = 16/520 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgccctttagcaagtttgtagtctgacattttgtagtctgcagctccaacatggtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgccctttagcaagtttgtagtctgacattttgtagtctgcagctccaacatggtttc 260

                                                                       
Query: 61  cattctgaaagacatcagaagcatgccatggggcctggtgcagcccagtggctttccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctgaaagacatcagaagcatgccatggggcctggtgcagcccagtggctttccttt 320

                                                                       
Query: 121 cctttccatttgtttttttgtttttttgttttttttttttttttttagattagctctgga 180
           |||||||            ||||||   ||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcc------------gttttt---ttttttttttttttttttagattagctctgga 365

                                                                       
Query: 181 gcaacagtggcagaatgacttgttaggataactggtgtctctggtagtttctggtagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcaacagtggcagaatgacttgttaggataactggtgtctctggtagtttctggtagttt 425

                                                                       
Query: 241 ctatctccctccgggggcccaaatacgtcagtgaccagggggttagcttcccactggaga 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctatctccctccggggtcccaaatacgtcagtgaccagggggttagcttcccactggaga 485

                                                                       
Query: 301 gaaggtaccagcagaaacactctgagatgggcagtcagcctctgtcccc-gctcccgact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 486 gaaggtaccagcagaaacactctgagatgggcagtcagcctctgtcccccgctcccgact 545

                                                                       
Query: 360 tctttcgtgtctgattgccgcctcatgccagaaggctcagcttgtccagacggatccctg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tctttcgtgtctgattgccgcctcatgccagaaggctcagcttgtccagacggatccctg 605

                                                                       
Query: 420 cccggcaggctttgcctcacaatttggtaacaccctgacaagctcgcagccagcagagtt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cccggcaggctttgcctcacaatttggtaacaccctgacaagctcgcagccagcagagtt 665

                                                   
Query: 480 ccatcagtgcccctcgccccatgccgaggctgtctgtgga 519
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ccatcagtgcccctcgccccatgccgaggctgtctgtgga 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)